Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00936 ATGGAAGAcacccaaaaagaaataattttccgGTCCAAACTTCCCGACATCCAAATCCCAACTCACCTCCCATTGCACAGTTATGTCTTCGAGAACATCTCACAGTTCCAAGACCGAACGTGCCTTATCAACGGAGACACTGGCGACACCTTCACGTACGCCGAGGTCCACCTCACCGCTCGCAGGGTCGCTGCCGGTCTCAACAATCTCGGCATCCAACGGGGTGACATCATAATGCTCTTACTCCGGAACTGCCACCAATTCGTCTTCGCCTTCCTCGGCGCCTCCTACCGCGGCGCCGTCGTCACCACAGCCAATCCCTTCTACACTTCGGCTGAGATCGCCAAGCAAGCCGCGGCTTCCAAAGCGAAGCTCATCATAACGCAAGCTGCCTTCGTCGACAAAGTTACCGTATTCGCGGAAGAAAACGACGTCAGAGTGATGTGTATTGATTCCCCACCGGCGGGTGTTTTGCATTTCTCTCAGCTCACCCAGGCTGACGAACGTGACATGCCAGCCGTTAAAATCAGCCCAGACGACGTCGTGGCACTGCCTTATTCGTCCGGAACTTCTGGGCTTCCCAAAGGCGTTATGTTGACGCACAAGAATCTGGTTACTACAGTGTCGATACTGGTTGATGGAGACAATCCAAATATGTATATTCACAGTGAGGACGTGCTTCTGTGTGTGCTACCTCTTTTTCATATCTATGCGCTCAATTCCATTTTCCTCTGTGGGGTAAGAGCTGGGGCAGCCATTCTTATTTTGCAGAAATTCGAGATTACTACGTTGTTGGAATCGATTCAGAAATATAAGGTGTCGGTTGCGTCGCTTGTGCCACCCATCATTATGACAATTGTTAAGAACCCAGATCTAGAACGGTACGACCTGTCGTCTGTTAGGCTAGTGACCACTGGTGCGGCACCCATGGGCGTGGAACTTGAACAAGCTGTCAAGGCTAAGCTTCCTGCTGCAACACTTGGACAGGGATATGGGATGACGGAGGCTGGGCCACTCGGTATATCCTTAGCGTTCGCAAAGGAGCCATTCGAGATAAAATCAGGTGCATGCGGGACCGTGGTGAGAAATGCTGAGGTTAAAATAGTTGACATTGAGACAGGTGTTTCCCTCCCAAGAAATAAATCCGGTGAAATTTGCATAAGAGGGGACCAAATTATGAAAGGTTACCTTAATGATCCGGAGGCCACAAAGAGGACCATAGACAAGGAGGGATGGTTACACACGGGTGACATTGGTTACATTGATGACGACGACGAACTCTTCATCGTTGATAGGCTAAAGGAGATTATCAAATACAAAGGTTTCCAAGTGGCCCCTGCTGAGCTTGAAGCAATATTGACTGCTCAACCTAACATTTCTGATGCTGCTGTTGTACCgaTGAAAGACGAAGCTGCAGGAGAGGTTCCAGTTGCATTTGTAGTGAGATCAAACGGTTCCGCTATATCCGAGGATGAAATCAAGCAACACATTGCAAAACAGGTGGTGTTTTACAAGAGAATCGATAGGGTTTTCTTCGTCGACGCTATTCCGAGAGCTGCCACAGGCAAAATTTTACGCAAGGATCTAGCAGCTAGGCTGGCGCAAGCCTCCTTCATCTTCGTCGTATG 1628 0.4865 MEDTQKEIIFRSKLPDIQIPTHLPLHSYVFENISQFQDRTCLINGDTGDTFTYAEVHLTARRVAAGLNNLGIQRGDIIMLLLRNCHQFVFAFLGASYRGAVVTTANPFYTSAEIAKQAAASKAKLIITQAAFVDKVTVFAEENDVRVMCIDSPPAGVLHFSQLTQADERDMPAVKISPDDVVALPYSSGTSGLPKGVMLTHKNLVTTVSILVDGDNPNMYIHSEDVLLCVLPLFHIYALNSIFLCGVRAGAAILILQKFEITTLLESIQKYKVSVASLVPPIIMTIVKNPDLERYDLSSVRLVTTGAAPMGVELEQAVKAKLPAATLGQGYGMTEAGPLGISLAFAKEPFEIKSGACGTVVRNAEVKIVDIETGVSLPRNKSGEICIRGDQIMKGYLNDPEATKRTIDKEGWLHTGDIGYIDDDDELFIVDRLKEIIKYKGFQVAPAELEAILTAQPNISDAAVVPMKDEAAGEVPVAFVVRSNGSAISEDEIKQHIAKQVVFYKRIDRVFFVDAIPRAATGKILRKDLAARLAQG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00936 536 Gene3D - 3 433 IPR042099 -
Bva05g00936 536 SUPERFAMILY Acetyl-CoA synthetase-like 8 535 - -
Bva05g00936 536 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Bva05g00936 536 CDD 4CL 19 529 - -
Bva05g00936 536 Pfam AMP-binding enzyme 31 439 IPR000873 -
Bva05g00936 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 533 - -
Bva05g00936 536 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Bva05g00936 536 Gene3D - 434 535 IPR045851 -
Bva05g00936 536 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00936 Bva-Chr5 4719937 4723613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00936 3 501 Monolignol Biosynthesis Gene Families AT1G51680 65.157 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00936 K01904 - jre:108998879 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00936 05 4719937 4723613 Bva05g00936 05 4719937 4723613 ECH