Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00923 ATGGGTCGAGCTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGGCCTTGGTCTCCAGAAGAGGATGCCAAGCTCAAAGCCTATATTGAAACATATGGAACTGGAGCCAATTGGATTGCTCTTCCCCAGAAAATTGGGCTCAAGAGATGTGGGAAGAGTTGCAGGCTTCGATGGTTAAATTACCTGAGGCCCAACATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAACCTCTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCAGCACAGCTACCTGGGAGGACGGACAATGATATCAAGAATTACTGGAATACCAGGTTGAAGAAGAAACTACTTGGGAGGAACAAGCAGTCTAACTTTCAATATCCCAGAAACACGAACGGGTTAATAGAAGAGAATCCATATGTAGATGCCCTAAGCAGCTCAGCTCTTGAGAGACTTCAACTGCATATGCAACTCCAGAGTCTCCAaaatcctttctctttctgtaaTAACCCTGCACTGTGGCCCAAGTTGCATCCTTCCCAAGAAAAGATGATTCATAGCTTACAATCCTTCAATGGTAGCTCTAGCACTTTGTTGCAGAATGCTTTGCTCTCTATGAATGCCGATCAAAGATCTCCAAAAGCTGCTACTGTTGGTGATGCAATTCAACAAGATGCTGTGCAGATTAGTAGTCCCAAAGTTGATCTTCTAGAGAATTCTTCGAATGGAATATCATCCATGGATAGTTCGGTTCCCTTCATGGGTACTGGGAATAAGAGCCCATTGGACTCAAACCTTGCAGCAAGAGGGGAAGGTTTTGAGCAATCTAATATGGGGATTCAGCAAGTTTGTGCACTGCAAGCTGAGCTAGATGACATTCTCAACAACAGAACAATGTGTTATAATCCACAGGAAGATCAGATGGCTGAATTTGATTGTTTCAGAGAAATTAACGGCTCAAAAGAAAGCTTGATGTGGTGGTCCAATGATATTGACACAAAATCAGCATCCTCAAACTCTTGGGATTCAGCAACTCCTGTTCTTCAGACGGATCATGGGATGTTTCAAGATTATGAACTAGGTTACAATTTGTA 1097 0.4248 MGRAPCCDKANVKKGPWSPEEDAKLKAYIETYGTGANWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRNKQSNFQYPRNTNGLIEENPYVDALSSSALERLQLHMQLQSLQNPFSFCNNPALWPKLHPSQEKMIHSLQSFNGSSSTLLQNALLSMNADQRSPKAATVGDAIQQDAVQISSPKVDLLENSSNGISSMDSSVPFMGTGNKSPLDSNLAARGEGFEQSNMGIQQVCALQAELDDILNNRTMCYNPQEDQMAEFDCFREINGSKESLMWWSNDIDTKSASSNSWDSATPVLQTDHGMFQDYELGYNL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00923 365 SMART sant 67 115 IPR001005 -
Bva05g00923 365 SMART sant 13 64 IPR001005 -
Bva05g00923 365 CDD SANT 71 113 IPR001005 -
Bva05g00923 365 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva05g00923 365 PANTHER OS09G0431300 PROTEIN 1 321 - -
Bva05g00923 365 Gene3D - 7 68 - -
Bva05g00923 365 PANTHER OS09G0431300 PROTEIN 1 321 - -
Bva05g00923 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva05g00923 365 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva05g00923 365 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva05g00923 365 CDD SANT 16 62 IPR001005 -
Bva05g00923 365 Gene3D - 70 137 - -
Bva05g00923 365 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva05g00923 365 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva05g00923 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00923 Bva-Chr5 4664803 4666174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00923 1 180 MYB Transcription Factor Family AT5G57620 79.032 7.72e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g00923 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00923 K09422 - gmx:778083 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00923 05 4664803 4666174 Bva05g00923 05 4664803 4666174 ECH