Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva05g00906 | ATGCTGACAACGGCGAGAGAAAGCTGGTCCTCTCCCTTGTGTCTTAGTCATGATCTCTCTTACCGCCTCAATTCCAAAACCTCTAGAAGGCTGAAAAGTTACGGTTGTAGAGCAAGCTTCTCTGTGCAGAGAAGACCTAACAGCACCCAGTCATTGGGTCCAGGCATTCTCTCTACCAGCTACGAGGCAGCGAATTTTGATCCCTTGGGTATTAACTCAGATTTCTCTTCTGCTCTAAATTCTACTTGTGAAAGTCTAGTAAGCttgttttcacaaaaatatgaaagttcTTCAAGTACAGGAAAGGGAAAACCTAGCTCTGCTCGAGGTGTAGCAGCTGCAATAGAAGATAGTTCCATTGATTTTGGGGATTTCTTCAAAGGTCCACTTCCAGGAAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCACGGCTTGGTGTATACATACCTTTAGGTGGGGTTAATAGAGACGCTTTCGTTGGTAATTTGGATCAGAACAGTTTATTAAGCACTTTGGACTCATTTTCTGGAGGAGGTATTGGTAGACTTGGGATATGCTCCCTTGGTATTGTTCCCTTTATTAATGCACAGATTGTATTTCAACTTCTTGCACAAATATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGgctggaagaaagaaagttctTCAGTACACTCAATATGCTTCGGTTGGATTTGCTATAGTACAGGCAATTGGCCAAGTACTCTACCTACGTCCCTATGTAAACGACTTTACTACACAGTGGGTTCTTTCATCTGTTATCCTTTTAACTCTTGGCTCTGTATTTACAACGTACATTGGTGAACGAATCTCAGACCTCAAACTTGGGAATGGCACTTCTCTTCTGATATTCACAAACATTATCTCCTACTTGCCTGCTTCTTTTGGTAGGACTTTTGCACAGGCATACCAGGATGCTAATTATGTTGGACTAGGCACTCTCATTGTGACCTTCTTTCTGTTGGTGCTTGGTATTGTTTACGTTCAAGAAGCAGAGAGAAAAATTCCTCTTAATTATGCTTCAAGATTCGCCAGCAGAAGTGGAGGGCTTGAAAAATCTGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTGATGCCAATCATATTTTCTACATCATCATTAGCACTTCCTGGTACTTTGGCACGTTTCACTGGCTTAAGTGCACTGAAGAAGGCTGCCATCGCTTTGAATCCCGGAGGCTCCTTCTATCTGCCGACGAACATCCTTTTAATTGCCTTCTTCAATTACTATTACACTTTCCTGCAATTGGACCCTGATGATGTGAGTGAACAGTTAAAACGCCAAGGTGCATCAATTCCACTTGTTCGACCAGGCAGAAGTACTGCTGCATTTATTAAAACCGTTCTTAGTCGAATTTCAGTTCTTGGTTCAACATTTTTGGCGATCTTGGCTGCTGGCCCCGCTGTCATTGAGCAGATTACGCACCTGACCGCATTTCGTGGATTTGCTGGAACATCTATTCTCATTCTTGTTGGTTGCGCGACAGACACGGCAAGAAAAGTTCAAGCTGAGATCATATCCCAGAAGTACAAGAACATAGAATTCTACGACTTTGACAAGTATTG | 1625 | 0.4148 | MLTTARESWSSPLCLSHDLSYRLNSKTSRRLKSYGCRASFSVQRRPNSTQSLGPGILSTSYEAANFDPLGINSDFSSALNSTCESLVSLFSQKYESSSSTGKGKPSSARGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTQYASVGFAIVQAIGQVLYLRPYVNDFTTQWVLSSVILLTLGSVFTTYIGERISDLKLGNGTSLLIFTNIISYLPASFGRTFAQAYQDANYVGLGTLIVTFFLLVLGIVYVQEAERKIPLNYASRFASRSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKKAAIALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTAAFIKTVLSRISVLGSTFLAILAAGPAVIEQITHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY | 541 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva05g00906 | 541 | PANTHER | PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC | 52 | 539 | - | - | |
| Bva05g00906 | 541 | ProSitePatterns | Protein secY signature 2. | 277 | 294 | IPR030659 | - | |
| Bva05g00906 | 541 | ProSitePatterns | Protein secY signature 1. | 185 | 204 | IPR030659 | - | |
| Bva05g00906 | 541 | Gene3D | SecY subunit domain | 125 | 530 | IPR023201 | - | |
| Bva05g00906 | 541 | SUPERFAMILY | Preprotein translocase SecY subunit | 126 | 524 | IPR023201 | - | |
| Bva05g00906 | 541 | Pfam | SecY | 186 | 517 | IPR002208 | GO:0015031|GO:0016020 | |
| Bva05g00906 | 541 | TIGRFAM | 3a0501s007: preprotein translocase, SecY subunit | 133 | 530 | IPR002208 | GO:0015031|GO:0016020 | |
| Bva05g00906 | 541 | Hamap | Protein translocase subunit SecY [secY]. | 122 | 534 | IPR026593 | - | |
| Bva05g00906 | 541 | PANTHER | SECY/SEC61-ALPHA FAMILY MEMBER | 52 | 539 | IPR002208 | GO:0015031|GO:0016020 | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 258 | 283 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 414 | 436 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 184 | 204 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 226 | 249 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 134 | 152 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 469 | 487 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 503 | 521 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 284 | 307 | - | - | |
| Bva05g00906 | 541 | PRINTS | Preprotein translocase SecY subunit signature | 375 | 394 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva05g00906 | Bva-Chr5 | 4563350 | 4567103 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva05g00906 | 39 | 541 | Chloroplast and Mitochondria Gene Families | AT2G18710 | 83.432 | 0.0 | 846 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva05g00906 | K10956 | - | gmx:100810430 | 857.825 |