Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00905 ATGGAACTAAAAAAGGGAAGGCTTGTCAGGTTCTATTCTGATggcaaaaagcaaaaagaaccTCTATGGGGAGGGTCTGAACCATCAAGACTCGAGAAGCCATCATCTGCATACAAGGTTTCCTCATCTTCCTATGCATTCCCTTGGGggaaaaatagatttattgAAACTTTCAAAACTGGGGGATCTAAGGTATTTCCTGAGGATCATGAGCCATGGCGTAAAAGAATACTGGACCCAGGAAGTGAGATAGTATTAAAATGGAATCGGGTTTTCATTGTTTCATGTTTGGTGGCTCTTTTTGTCGATCCGTTGTACTTTTACTTGCCCAGTGTGAGAGGGAATACCGAGTCTTTATGTGTGAGGACAGACCTAAACTTGCGGATTGTTGTGACATTTCTCCGGACTATTGCGGACATTTTTTATCTGTTGCACATGGTGATAAAGTTCAGAACAGCATATGTGGCTCCAAGCTCTCGGGTGTTTGGCAGGGGTGAACTTGTTATGGACCCGAAGAAAATCGCAAGGAGATATATCAGATCTGATTTCTTCATTGATTTAATTGCCACATTGCCTCTTCCACAGATGGTTATCTGGTTTATTATACCAGCGACAAGAAGCTCTCAGACAGACCATAAGAATAATGCTCTTGCTTTGATTGTTCTTCTCCAATATGTTCCTagattatatttgatatttccaCTGAGTTCTCAAATAATCAAAGCCACAGGAGTGGTTACAAAGACTGCCTGGGCAGGAGCAGCATATAATCTACTATTGTATATCTTGGCTAGCCATGTTCTAGGGGCTGCATGGTATGTTCTTTCTGTGGACCGGTATACCTCATGTTTGAAATCCATTTGCAAAAGGGAATCAAGCCCTGAAAAATGCTTTCTTAATTACCTGGATTGTAGTTCTTTAAATCTTGACAAACGCAGATTATGGGAAAATAGTACAAGTGTATTTGAGAAATGTGATCCTAGTAAAGGAATTGAATTTAAGTACGGCATATTTGAAAACGCAGTGACAACAAACGTAGTCTATTCAGATTTCATCCCAAAGTACTTGTATTGTTTATGGTGGGGGCTGCAGCAGCTAAGTTCTTATGGGCAGAATTTATCTACAAGCACCTTTATTGGAGAAACGTCATTTGCTATTCTCATTGCCATCTTGGGTCTTGTATTATTTGCCCATTTGATTGGGAACATGCAGACGTATTTACAATCAATCACTATAAGACTTGAGGAGTGGAGGCTTAAGCGAAGAGATACTGAGGAGTGGATGAGGCATCGGCAACTCCCTGAAGATTTAAGACAACTTGTTCGGCGCTTTGTTCAGTATAAGTGGGTTGCAACTCGAGGTGTTGATGAAGAAACCATTCTACAAGGATTACCTGCTGATCTTCGCCGTGATATCCAACGACACCTATGCTTAGACCTTGTTCGACGAGTTCCCTTCTTCTCCCAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGACTGGCTGCTTGGCGTcgatataagaaaagaaagtctGCCAAAGATCTCAGCATGCGGGAAGCACTTGCTTTGGATGAGACAGAAGCCAATGAAACGGAGCAGGAAGAACATTCTGCTGGTTCAAATTCTTCTCAAGCTAAATTGAACCTTGGAGTCACAATACTTGCTTCAAGGTTTGCTGCAAACACAAAAAGAGGAGCTCAGAAGATTAAAGATGACCTGCCAAAGTTACAGAAACCTGAAGAACCTGACTTTTCTACTGAAGTTGATGATGACTA 1781 0.4009 MELKKGRLVRFYSDGKKQKEPLWGGSEPSRLEKPSSAYKVSSSSYAFPWGKNRFIETFKTGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVRGNTESLCVRTDLNLRIVVTFLRTIADIFYLLHMVIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDLIATLPLPQMVIWFIIPATRSSQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYILASHVLGAAWYVLSVDRYTSCLKSICKRESSPEKCFLNYLDCSSLNLDKRRLWENSTSVFEKCDPSKGIEFKYGIFENAVTTNVVYSDFIPKYLYCLWWGLQQLSSYGQNLSTSTFIGETSFAILIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRQLVRRFVQYKWVATRGVDEETILQGLPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLAAWRRYKKRKSAKDLSMREALALDETEANETEQEEHSAGSNSSQAKLNLGVTILASRFAANTKRGAQKIKDDLPKLQKPEEPDFSTEVDDD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00905 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 51 503 - -
Bva05g00905 593 SUPERFAMILY cAMP-binding domain-like 416 502 IPR018490 -
Bva05g00905 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 51 503 - -
Bva05g00905 593 Gene3D - 91 411 - -
Bva05g00905 593 Gene3D Helix hairpin bin 414 477 - -
Bva05g00905 593 MobiDBLite consensus disorder prediction 566 593 - -
Bva05g00905 593 PRINTS EAG/ELK/ERG potassium channel family signature 399 408 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva05g00905 593 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva05g00905 593 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva05g00905 593 PRINTS EAG/ELK/ERG potassium channel family signature 449 456 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva05g00905 593 PRINTS EAG/ELK/ERG potassium channel family signature 381 392 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva05g00905 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 503 590 - -
Bva05g00905 593 Pfam Ion transport protein 88 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva05g00905 593 MobiDBLite consensus disorder prediction 566 585 - -
Bva05g00905 593 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 503 590 - -
Bva05g00905 593 MobiDBLite consensus disorder prediction 526 546 - -
Bva05g00905 593 SUPERFAMILY Voltage-gated potassium channels 82 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00905 Bva-Chr5 4557388 4562841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00905 497 592 Ion Channels AT4G30360 48.515 1.40e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00905 K05391 - gmx:100808425 848.195