Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00901 ATGGCTCCTCCAAACTATCGTCTTCCTCAATCTCAACCCCATCACACGCCGCCAAAACCGAACCGCAAGCTCCTCTCCCTCCTCCTCAAATCTATTGTTATGATCTTTCTCACCtccctcttcttcctctttctggGGTTTGCTGCCTTCGTCCTTCTTCACCTCTGCCTCGTCGGTGGCGTCCTCCACAGCCTCCGCTTCCGCCACACCACCCAACTTGCGACTTCCTCAAATAGGTTCTCACCTCGGGATGTCAAAAAGCTTCCCCAGTTCAGGTTTGCCTCTGCTGCCGAAACCGGCTCTGATACCTTATGCGTGGTCTGCTTGGATGCCTTCAGGAACGGCCAGTGCTGTAGGAAGCTTGTTGCCTGTGGTCACGTATTTCACAGGAGATGTGTGGATATTTGGTTGATTAAGGTCGCTGCCTGTCCTACCTGCCGGACACCTGTTCGATTGAATCCTTCTGTGCTGCGTTTCCAAACAGAAGAGGCTAATGAGCAATTGGAAACTTATGGTACGGCCGATGCTTTGAGGATTTCGTA 542 0.5 MAPPNYRLPQSQPHHTPPKPNRKLLSLLLKSIVMIFLTSLFFLFLGFAAFVLLHLCLVGGVLHSLRFRHTTQLATSSNRFSPRDVKKLPQFRFASAAETGSDTLCVVCLDAFRNGQCCRKLVACGHVFHRRCVDIWLIKVAACPTCRTPVRLNPSVLRFQTEEANEQLETYGTADALRIS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00901 180 SUPERFAMILY RING/U-box 97 154 - -
Bva05g00901 180 SMART ring_2 105 146 IPR001841 -
Bva05g00901 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Bva05g00901 180 PANTHER RING-H2 FINGER PROTEIN ATL56 11 167 - -
Bva05g00901 180 Pfam Ring finger domain 105 147 IPR001841 -
Bva05g00901 180 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Bva05g00901 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00901 Bva-Chr5 4531022 4531564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00901 19 152 C3H Transcription Factor Family AT2G18670 45.185 3.92e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00901 - - gmx:102664895 184.496