Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00899 ATGGGCAGAATTTTCCTCCAAGTTAAAGGAAACGCCTTTGTGCCTCCTTTAGAGCAATTaccatattttctttctcagcCAAACCCACCTTCACCTCCCCCATTTCGATCTGATGGGTTCAATTTAAACGACAAGGTGAGTCCCAGGATACTACTCATCATTATAATTCTGGCCTTTGTTTTCTTCGTCACTGGTTTGCTCCATCTCCTTGTTAGATTCCTATGGAAACCTTCTAGTAGAGAGGGAGATGATTTAGAAAGTGTGACTGCTCTTCAAGGGCAATTGCAGCAACTCTTCCACCTCCACGATGCTGGCGTTGACCAGTCCTTCATAGAGACCCTCCCTGTCTTCAATTACAAAGCCATTATAGGAGTGAAGGACCCATTTGATTGTGCAGTTTGTTTGTGTGAATTCGAGCCTGAAGACAAGCTCAGATTGTTACCTAAATGTAGTCATGCCTTTCACATGGAGTGTATAGATACTTGGCTCCTTTCCCACTCTACTTGCCCTCTTTGCAGAGCTAACTTGCTCCCTGATATCTCTTCAAACAATAGCTGTTCTCCCATTGTTCTAGTCCTAGAATCTGGGAGTGAGAGTTCAAGGGAGATTATCCCAGAAAGAGAGGGTGCTATTTGTAGAAGCAGTTCAGTAATGACAGCAAATTCCCATCTGGGTGGCCGTGGAGAAAACGAATTCGGGTCAACCCCTGTCGATTTGGCTCATAAATCGGGTGATTTGAGTTCAAATGAAAATACTGATCCAACCATAGTAGTGGATTCAATGGAAAAAGTAGTCACTGTGAAGCTGGGGAAGTTCAGAAGCGTGGATGGTGGAGAAAGCAGCAGCGGTAACAATGCAGATGCAAGAAGGTGCTTCTCTATGGGGTCCTTTGCTTATGTAATGGACGAGAATTCGTCACTGCAGGTACCCATAAGAACCCCAGTGAAAAAGCAGCCAAGCAAGAAGCCTTCTTTACCATTAACACCTGGCCATAGACTTGCAATGTCAGAATGCGACTGTGAATCCATAAGAGATTTCAAGTTCGCAACTTTTGATGGGACTAGAAATGCCGTGGCTTTTGGGGTTGGGAGTTCTGGTAATGCCAATGGAGCTACTATCGGGAGTAGCAAAAAAGAGAGTTTCTCATTTTCCAAGATTTGGCTGAGGGGGAAGAAAGATAAGCCAAATGCAGTGGCAGAAGGATCCAGAAGAGCTGTTTCGTTCCGGTTCCCGGCGCAGGGAAATGTGGTCGACGCAGATGATCGTAAAAGcaaaaatgagaactttgacaCAAGGAGTATTATTTCTGAATTGGATATGGGCAAGTGGGAAAATGGAGCAAGTGAATACTGCTACGATGACGAAAATCAGAGCTGTTATAGTATGGACTCTCAGGCAAGAGCACCTTCCTTTGCACGAAGGACTCTGCTTTGGCTTACGGGTAGACAGAACAAGGTTATTCACTCATCCTCTGCATCCAACTCCTA 1487 0.4391 MGRIFLQVKGNAFVPPLEQLPYFLSQPNPPSPPPFRSDGFNLNDKVSPRILLIIIILAFVFFVTGLLHLLVRFLWKPSSREGDDLESVTALQGQLQQLFHLHDAGVDQSFIETLPVFNYKAIIGVKDPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLPDISSNNSCSPIVLVLESGSESSREIIPEREGAICRSSSVMTANSHLGGRGENEFGSTPVDLAHKSGDLSSNENTDPTIVVDSMEKVVTVKLGKFRSVDGGESSSGNNADARRCFSMGSFAYVMDENSSLQVPIRTPVKKQPSKKPSLPLTPGHRLAMSECDCESIRDFKFATFDGTRNAVAFGVGSSGNANGATIGSSKKESFSFSKIWLRGKKDKPNAVAEGSRRAVSFRFPAQGNVVDADDRKSKNENFDTRSIISELDMGKWENGASEYCYDDENQSCYSMDSQARAPSFARRTLLWLTGRQNKVIHSSSASNS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00899 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 179 IPR013083 -
Bva05g00899 495 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 19 400 - -
Bva05g00899 495 CDD RING-H2_PA-TM-RING 130 173 - -
Bva05g00899 495 SMART ring_2 131 172 IPR001841 -
Bva05g00899 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 400 - -
Bva05g00899 495 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Bva05g00899 495 Pfam Ring finger domain 130 173 IPR001841 -
Bva05g00899 495 SUPERFAMILY RING/U-box 110 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00899 Bva-Chr5 4523919 4525831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00899 41 493 C3H Transcription Factor Family AT2G18650 45.053 2.88e-99 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00899 - - jre:109018765 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00899 05 4523919 4525831 Bva05g00899 05 4523919 4525831 ECH