Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00880 ATGGCGTTCAATTGggtttttcttctctgttttctCTTGTGTGCTGGACTTGGTTTCTCTTACGAGCCTCGCAACCATGAAGTGGAGGCTTTGATGAGCATAAGAGCGGCTCTGGATGATCCACATGGGGTGTTGAGCAACTGGGATGAGTACTCGGTGGACCCTTGCAGCTGGGCTATGATCACTTGCTCATCTGACTCCGTTGTTGTTGGCCTGGGAGCTCCAAGCCAGTCTCTTTCTGGAACTTTATCCGGAGCCATTGGAAATCTGACAAATCTTCGACAAGTGTTACTGCAGAACAACAATATCTCGGGAAAAATTCCTTCGGAGCTTAGTGCCCTTCCCAAGCTTCAGACTTTAGATCTTTCCAACAATCGTTTCTCTGGTGCCATTCCAGGGTCTCTCACTCAGTTAAATAGTCTCCAGTACCTGAGGCTGAACAACAATAGCTTGTCTGGGCCCTTTCCTGTGTCACTGTCCAAAATACCACAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCGTTACCCAAATTTCCAGCCAGATCATTCAACGTTGTGGGAAATCCACTACTTTGTGGAAGCAGTTCCGCTGAAGGTTGCTCTGGATCAGCAACCCTTATGCCTGTTTCCTTCTCTCTATCATCATCACAAGgAAAACACAAGTCCAAGAAACTAGGAATCGCTCTTGGGGTCAGCCTTGGTTGCGCTAGTCTCATACTCCTTTCATTTGGGCTTTTATGGTATAGAAAGAGACGACAGCTTCGAGCCATCCTGTACATTAGAGACTGCCAGGAAGAGGGACTTGTCGGATTGGGAAACCTAAAGAACTTCACTTTCAGAGAACTCCAAAATGCAACAGATCATTTCAGCTCAAAGAATATACTTGGCGCTGGAGGTTTTGGCAATGTTTACAGGGGGAAGCTCGGAGATGGGACCATGGTAGCAGTGAAAAGGCTGAAGGATGTAACTGGAGGTGCTGGTGAATCGCAGTTTCGAACTGAATTGGAGATGATCAGCTTGGCAGTTCACCGAAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTTTATGTCTAATGGTAGTGTGGCATCCAGGCTTAGAGGTAAGCCTGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGTCTTCTATATTTACACGAGCAATGTGATCCAAAGATAATTCACAGAGATGTAAAGGCTGCTAATGTGCTTCTGGATGAATATTGTGAAGCTGTTGTTGGCGATTTTGGCCTTGCAAAGCTTCTTGACCATGCTGACTCCCATGTCACAACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCGGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGCTAGAACTCATAACTGGAATGACAGCTCTGGAATTTGGGAAAACGGTGAATCAAAAAGGTGCAATGCTGGAGTGGGTTAAGAAAATACAGCACGAAAAGAAGGTTGAAGTGTTGGTGGACAAAGAGCTAGGAAGCAACTATGACCGTATTGAGGTGGGAGAGATGCTGCAAGTAGCTCTACTTTGCACTCAATATCTACCAGCACATAGGCCCAAAATGTCTGAAGTGGTCCGAATGCTTGAAGGTGATGGCCTTGCTGAGAAGTGGGCAGCATCACATAATCATGGAACTCTCAGCATGAACTCCTTCCACAGCAACAGCAACAATGGCAATAGTTCATCCCGCCCTACCACATCTTCAAAACATGATGACAGTGTTCATGATCGTTCTAGCATGTTCGGCATGACAatggatgatgatgatgatgaacatTCTTTGGATTCCTATGCCATGGAACTCTCTGGCCCTAGGTA 1919 0.4482 MAFNWVFLLCFLLCAGLGFSYEPRNHEVEALMSIRAALDDPHGVLSNWDEYSVDPCSWAMITCSSDSVVVGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGKIPSELSALPKLQTLDLSNNRFSGAIPGSLTQLNSLQYLRLNNNSLSGPFPVSLSKIPQLAFLDLSFNNLSGPLPKFPARSFNVVGNPLLCGSSSAEGCSGSATLMPVSFSLSSSQGKHKSKKLGIALGVSLGCASLILLSFGLLWYRKRRQLRAILYIRDCQEEGLVGLGNLKNFTFRELQNATDHFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGGAGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPFMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVKKIQHEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHGTLSMNSFHSNSNNGNSSSRPTTSSKHDDSVHDRSSMFGMTMDDDDDEHSLDSYAMELSGPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00880 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Bva05g00880 639 PRINTS Leucine-rich repeat signature 162 175 - -
Bva05g00880 639 PRINTS Leucine-rich repeat signature 117 130 - -
Bva05g00880 639 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672|GO:0006468
Bva05g00880 639 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Bva05g00880 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Bva05g00880 639 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Bva05g00880 639 MobiDBLite consensus disorder prediction 582 639 - -
Bva05g00880 639 MobiDBLite consensus disorder prediction 602 621 - -
Bva05g00880 639 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00880 639 ProSiteProfiles Protein kinase domain profile. 293 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00880 639 Gene3D Phosphorylase Kinase; domain 1 264 369 - -
Bva05g00880 639 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Bva05g00880 639 MobiDBLite consensus disorder prediction 582 601 - -
Bva05g00880 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 639 - -
Bva05g00880 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Bva05g00880 639 Gene3D Transferase(Phosphotransferase) domain 1 370 581 - -
Bva05g00880 639 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 639 - -
Bva05g00880 639 SUPERFAMILY L domain-like 25 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00880 Bva-Chr5 4412256 4417520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00880 3 508 Receptor kinase-like Gene Family AT2G23950 77.075 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Bva05g00880 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00880 - - gmx:100797186 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00880 05 4412256 4417520 Bva05g00880 05 4412256 4417520 ECH