Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00877 ATGCCAGACTTAGGAAATCTATCGCTCTCTGCGACTCTGACTCTTGCTCACTGCCCTAATCTGAAGCCCGTAGCTGAGACATCTGATCTGACCAATTCTTTGTACCATGTCCCAGTCAAAACCCTAGGCAATGGCTGCATTTCAGACCAAGCTTTGCTATTCCCGGTTCTCCCGAAAGAGGAGGCCGACAATGGAAAGGAAATTAAGGTTTTCAGGCGGAGGCGTGGTTCATTAGATCGAGTGAAGAAGGCAGCCAATGGAAAGGGTTTAGAAGATCATGTGAAAGATTGGTCTCAGAAGAGGATGAATTCGGGCTTTTTCAGACTGGGTCACTCTCTTCCGTTCCTTGTTGGTGCACCAAAAATgGTTGAATGTCTTGTTTGCCATGGTCCTGTGCATCCTGGGGAGGAGCTGTTATGTTCTGTTCGTGGTTGTGAGGGAGTCTACCATATGGAATGTGCAAAAGCAGCTCTTGGTGTCCCAAATCTCCAAAAATTCAAGTGCCCACAACATGCATGCTTCGtttgcaaacaaaaattacaatggAGGTGTGTACGATGCACAGTGGCATCTCATAATAAATGTGCACCATGGCCAGACACAGTGGTACATCTGGAAGACCGTCCTGGACAAGCTCTATGCTGGAGGCATCCTACTGACTGGCGGCTGGATAGGAAgCATGAAGTTTCAACAAGTGACATAGAGGAAATATTTTGCCGCTTGCCACTTCCCTATGTCGATGAGGAGTTCAAGATTGATTTCACGTGGAAAGAGACAGAGAGTAAGATGGAGCCACCGCCTTACGTACACATAAGACGCAACATATACCTTGTGAAGAAGAAGCGTAGTGATGTATATGATGGGGCAGGGTGCACCAGTTGCAGTTCTACATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGTTGCTCAAAGGCTTGTCGCTGCCCTGAAAGTTGCAGTAATAGACCATTTCGCAAGGAGAAAAAGATCAAGATTGTTAAGACTGAACTATGTGGATGGGGAGTAGAGGCCGctgaaaacataaataaaggCGAATTTGTAATTGAGTATATTGGAGAAGTAATTGATGATGCTTTGTGTGAAAAAAGGCTTTGGGACATGAAATACAGAGGTGTACAGAAATTTTATATGTGTGAAATTCGGAAAGACTTCACAATTGATGCAACTTTCAAAGGAAATACATCACGCTTTTTAAATCATAGCTGTGATCCCAACTGTGTTCTGGAAAAGTGGCAAGTTGACGGTGAGACACGCGTGGGTGTATTTGCTGCCCGGTCAATAGAAGTTGGAGAGCCATTAACATATGATTATAGATTTGTGCAATTTGGACCAGAGGTAATATGTCACTGTGGTGCCCCAAATTGTCAAGGCTTTCTAGggacaaaaaagaagattgaTAAGGTTGATCTTTGTTGGGGCTCAAAACGTAAGAGAACGTCAACTTCCTGCATTGCGATAATAGCTATATG 1496 0.4285 MPDLGNLSLSATLTLAHCPNLKPVAETSDLTNSLYHVPVKTLGNGCISDQALLFPVLPKEEADNGKEIKVFRRRRGSLDRVKKAANGKGLEDHVKDWSQKRMNSGFFRLGHSLPFLVGAPKMVECLVCHGPVHPGEELLCSVRGCEGVYHMECAKAALGVPNLQKFKCPQHACFVCKQKLQWRCVRCTVASHNKCAPWPDTVVHLEDRPGQALCWRHPTDWRLDRKHEVSTSDIEEIFCRLPLPYVDEEFKIDFTWKETESKMEPPPYVHIRRNIYLVKKKRSDVYDGAGCTSCSSTCSDDCVCRVQCISCSKACRCPESCSNRPFRKEKKIKIVKTELCGWGVEAAENINKGEFVIEYIGEVIDDALCEKRLWDMKYRGVQKFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVICHCGAPNCQGFLGTKKKIDKVDLCWGSKRKRTSTSCIAIIAI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00877 498 SUPERFAMILY SET domain 248 459 IPR046341 -
Bva05g00877 498 ProSiteProfiles Post-SET domain profile. 453 469 IPR003616 -
Bva05g00877 498 CDD SET_ASHR3-like 331 469 - -
Bva05g00877 498 SMART PostSET_3 453 469 IPR003616 -
Bva05g00877 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 220 IPR013083 -
Bva05g00877 498 PANTHER SET DOMAIN PROTEINS 1 496 - -
Bva05g00877 498 Gene3D SET domain 245 488 IPR046341 -
Bva05g00877 498 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 498 IPR025787 -
Bva05g00877 498 Pfam SET domain 341 446 IPR001214 GO:0005515
Bva05g00877 498 ProSiteProfiles SET domain profile. 330 447 IPR001214 GO:0005515
Bva05g00877 498 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 1 496 - -
Bva05g00877 498 SUPERFAMILY FYVE/PHD zinc finger 119 179 IPR011011 -
Bva05g00877 498 ProSiteProfiles AWS domain profile. 287 330 IPR006560 GO:0005634|GO:0018024
Bva05g00877 498 SMART set_7 330 453 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00877 Bva-Chr5 4387869 4393774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00877 311 468 C2H2 Transcription Factor Family AT2G23740 37.430 5.38e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva05g00877 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00877 - - jre:108989501 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00877 05 4387869 4393774 Bva05g00877 05 4387869 4393774 ECH