Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00875 ATGACGAAATTGTCACAGCAAACCCAGAAAGACAATGCAAGCAAGAACAATGTTGTTAATGTAACTAACACTGTCACCACCAAGGTCAAGCGAACAAGGAAAAGTGTCCCTAGAAATTCTCCTCCTCAACGTAGCTCAATTTACAGAGGAGTCACTAgGCACCGATGGACGGGCCGTTATGAAGCTCATTTATGGGACAAGAATTGCTGGAATGAATcacaaaacaagaaaggaCGTCAAGGTGCttatgatgatgaagaagtggCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATACTTAATTTTCCGTTTGCGACCTATCAAAACGAACTGAAGGAAATGGAAGGTCAATCCAGAGAAGAATATATTGGATCACTAAGGAGGAAAAGCAGTGGTTTTTCTCGAGGAGTTTCCAAATATAGAGGTGTTGCAAGacacCATCACAATGGAAGATGGGAAGCTCGGATTGGTAGAGTTTTTGGCAACAAATATCTCTATCTTGGCACTTATGCTACTCAAGAAGAAGCTGCCACGGCATATGATATGGCGGCTATCGAATACCGTGGACTCAACGCTGTTACCAACTTCGACCTCAGCCGTTATATCAAGTGGCTTAAGCCCAACAACAGCAATAACCATGACAACGTGATTAAAGTTAACCCTAGTGAACCTAACCctaagtttgacaccaacttTACTCCAAACCCTAATCAAGAACAtgccttcaattttttccacAACCACCCATCATACAATAATGGAGAAGAAACCAAGGTGGCTCAGCCACGGCCGGCGGCAACCACCACCACATCAGCTCTAGGACTGCTGCTTCAGTCGTCCAAGTTTAAGGAAATGATGGAGATGGCATCTGCCGCTGATTTGTCCCCTCCACCGGAGTCGGAGCTGCCGCAGTGCTCATTCCCCGATGACATACAGACATACTTTGAGTGTGAAGATTCTTCAAATGGATATGGAGAAGAggatgatattattttcagtGAGCTCAACTCATTCGTTCCTCCTATGTTCCAGTGTGAATTTGAGGCTTG 1070 0.4093 MTKLSQQTQKDNASKNNVVNVTNTVTTKVKRTRKSVPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEVAAHAYDLAALKYWGQDTILNFPFATYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNSNNHDNVIKVNPSEPNPKFDTNFTPNPNQEHAFNFFHNHPSYNNGEETKVAQPRPAATTTTSALGLLLQSSKFKEMMEMASAADLSPPPESELPQCSFPDDIQTYFECEDSSNGYGEEDDIIFSELNSFVPPMFQCEFEA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00875 356 CDD AP2 145 206 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 SUPERFAMILY DNA-binding domain 145 206 IPR016177 GO:0003677
Bva05g00875 356 ProSiteProfiles AP2/ERF domain profile. 47 110 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 340 - -
Bva05g00875 356 SMART rav1_2 47 116 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 Gene3D AP2/ERF domain 47 112 IPR036955 GO:0003700|GO:0006355
Bva05g00875 356 Gene3D AP2/ERF domain 145 206 IPR036955 GO:0003700|GO:0006355
Bva05g00875 356 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 Pfam AP2 domain 47 102 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 Pfam AP2 domain 145 196 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 CDD AP2 46 110 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Bva05g00875 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 340 - -
Bva05g00875 356 SUPERFAMILY DNA-binding domain 46 111 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00875 Bva-Chr5 4380326 4382572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00875 43 253 AP2-EREBP Transcription Factor Family AT5G57390 57.759 2.37e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva05g00875 AP2 1.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00875 K09285 - gmx:100804555 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00875 05 4380326 4382572 Bva06g00792 06 7241969 7244258 BWGD
Bva05g00875 05 4380326 4382572 Bva05g00875 05 4380326 4382572 ECH