Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva05g00856 | ATGGAAGCCAGCGCTGGACTAGTTGCTGGGTCTTACAATCGCAACGAGCTCGTCGTCATTCACGGTCATGAAGAGCCCAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGACAATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTTTGCCGGCCGTGCTATGAGTACGAAAGGAGGGAAGGTAGCCAACTTTGCCCACAGTGCAAGACCAGATACAAACGTCTTAAAGGGAGCCCGAGGGTGGAGGGAGATGATGACGAAGAGGACGTGGATGATATTGAGCATGAGTTCAAAATTGATGACGAAAAGAACACGCATAACCAAGTTGCAGAAGCCATGCTGCAAGGTAAGATGAGCTATGGAAGAGGacctgaagatgaagaaaatgctCAATACCCACCCATTATTGCTGGTGGTACTCGATCCCGAGTGGTGAGTGGGGAGATCCCAATAACATCTCATGGTTATGGGGAGCAGATGTTATCTTCTTCACTTCATAAACGAGTACATCCATATCCGGTGTCTGAGCCCGGAAGTGAAAGATGGGATGACAAGAAAGAGGATGGGTGGAAAGATAGTATGGATGACTGGAAATTGCAGCAAGGGAATCTAGGGCCAGAACCTGATGATGACCCTGATGCGGCCATGCTAGATGAAGCAAGGCAGCCACTGTCGAGAAAAGTGCCAATAGCATCTAGCAAAATCAATCCATATAGGATGCTTATTGTGGCACGGCTTGTTATTCTGGGTTTCTTCCTCAGATATAGAATCATGCACCCAGTACATGATGCAATAGGGCTATGGCTAACCTCTATTGTATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACTTACCTGGATCGCCTTTCAATCAGGTATGAGAGGGAAGGTGAACCCAATATGCTTGCCCCTGTAGATGTCTTCGTTAGTACAGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAAGTTTCATGCTATATTTCTGATGATGGAGCTTCGATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTGCAAGAAAGTGGGTACCTTTCTGCAAGAAATTTAACATAGAACCTCGAGCACCAGAGATGTACTTCTGTGAGAAGATTGATTACCTAAAGGATAAAGTTCAGCCCACCTTCGTTAAAGAGCGTCGAGCTATGAAGAGAGAATATGAAGAATTTAAAGTTAGGATCAATGCAATGGTCGCAAAAGCTCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCTGGAAACAACACTAAGGACCACCCAGGAATGATTCAAGTCTTTCTTGGTCACAGTGGAGGCTTTGACACTGAAGGAAACTTGCTTCCTCGTCTTGTCTACGTCTCAAGAGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTCATTCGGGTATCTGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTAGATTGTGATCATTATGTCAATAACAGCAAGGCCGTGAAAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAATTTCCTCAAAGGTTTGATGGTATTGATAGGCACGATCGTTATGCAAACAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGAATTCAAGGCCCTGTATATGTGGGCACGGGGTGTGTGTTCAGGAGGCAAGCTTTATATGGCTACAATCCTCCCAAGGGTCCTAAGCGCCCAAAGATGGTAAGCTGCGACTGCTGCCCGTGTTTCGGGCGCCGCAAGAAGCTTAAGTATGCCAATGATGCAAATGGAGAGGCTATAACCCTACAAGGAATGGATGAGGACAAAGAGTTGCTGAAGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACTCTAATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGCCCAGCAGCACTGCTTAAAGAAGCCATTCATGTCATCAGTTGCGGCTACGAAGACAAAACTGAATGGGGAACTGAGCTCGGTTGGATCTATGGATCTATCACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGGGGTTGGAGGTCTATTTACTGTATGCCGAAGAGAGATGCATTCAAGGGTACAGCTCCTATTAACTTGTCAGATCGTCTCAACCAGGTGCTTCGTTGGGCTCTTGGTTCCATTGAGATCTTTTTCAGTCGCCACTGCCCAGCTTGGTATGGCTACAAAGGGGGAAATAATCTCAAGTGGCTTGAGAGATTTGCCTATGTCAACACAACTGTCTACCCCTTCACCTCCCTTCCTCTACTTGCCTACTGTATACTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTGGGCTAGTTTGTACTTCATtgctctcttcctttcgatcTTCGCAACCGGTATTCTGGAGTTGAGATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTGTTTGCTGTTATACAAGGTCTTCTCAAAGTTCTGGGTGGAATTGACACCAACTTCACAGTTACATCAAAGGCAACAGATGATGAGGAATTTGGAGAATTATACACATTTAAATGGACAACTCTCCTAATCCCTCCAACCACTATCTTAATCATCAACCTTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGATACCAGTCCTGGGGACCTCTATTTGGAAagctcttcttctccttctggGTGATTGTCCATCTGTATCCATTCCTAAAGGGATTGATGGGTCGCCAAAACCGCACACCCACCATTGTTGTCATATGGTCAGTGCTTTTGGCTTCTATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTCATGAAAACTATGGGACCTGATACGAAGCAATGTGGAATCAACTGCTG | 3122 | 0.4475 | MEASAGLVAGSYNRNELVVIHGHEEPKPLKNLDGQVCEICGDNVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFKIDDEKNTHNQVAEAMLQGKMSYGRGPEDEENAQYPPIIAGGTRSRVVSGEIPITSHGYGEQMLSSSLHKRVHPYPVSEPGSERWDDKKEDGWKDSMDDWKLQQGNLGPEPDDDPDAAMLDEARQPLSRKVPIASSKINPYRMLIVARLVILGFFLRYRIMHPVHDAIGLWLTSIVCEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKVSCYISDDGASMCTFEALSETAEFARKWVPFCKKFNIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAMVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGFDTEGNLLPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVKEAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKLKYANDANGEAITLQGMDEDKELLKSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRDAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPAWYGYKGGNNLKWLERFAYVNTTVYPFTSLPLLAYCILPAVCLLTDKFIMPPISTWASLYFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTMGPDTKQCGINC | 1040 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva05g00856 | 1040 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 83 | IPR001841 | - | |
| Bva05g00856 | 1040 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 110 | IPR013083 | - | |
| Bva05g00856 | 1040 | Pfam | Zinc-binding RING-finger | 27 | 104 | IPR027934 | - | |
| Bva05g00856 | 1040 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
| Bva05g00856 | 1040 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 492 | 623 | IPR029044 | - | |
| Bva05g00856 | 1040 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 345 | 863 | IPR029044 | - | |
| Bva05g00856 | 1040 | CDD | mRING-HC-C4C4_CesA_plant | 35 | 85 | - | - | |
| Bva05g00856 | 1040 | Pfam | Cellulose synthase | 332 | 1034 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
| Bva05g00856 | 1040 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 1040 | - | - | |
| Bva05g00856 | 1040 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 1 | 1040 | - | - |
Showing 1 to 10 of 12 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva05g00856 | K10999 | - | gmx:100815436 | 2002.25 |
Showing 1 to 1 of 1 entries