Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00856 ATGGAAGCCAGCGCTGGACTAGTTGCTGGGTCTTACAATCGCAACGAGCTCGTCGTCATTCACGGTCATGAAGAGCCCAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGACAATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTTTGCCGGCCGTGCTATGAGTACGAAAGGAGGGAAGGTAGCCAACTTTGCCCACAGTGCAAGACCAGATACAAACGTCTTAAAGGGAGCCCGAGGGTGGAGGGAGATGATGACGAAGAGGACGTGGATGATATTGAGCATGAGTTCAAAATTGATGACGAAAAGAACACGCATAACCAAGTTGCAGAAGCCATGCTGCAAGGTAAGATGAGCTATGGAAGAGGacctgaagatgaagaaaatgctCAATACCCACCCATTATTGCTGGTGGTACTCGATCCCGAGTGGTGAGTGGGGAGATCCCAATAACATCTCATGGTTATGGGGAGCAGATGTTATCTTCTTCACTTCATAAACGAGTACATCCATATCCGGTGTCTGAGCCCGGAAGTGAAAGATGGGATGACAAGAAAGAGGATGGGTGGAAAGATAGTATGGATGACTGGAAATTGCAGCAAGGGAATCTAGGGCCAGAACCTGATGATGACCCTGATGCGGCCATGCTAGATGAAGCAAGGCAGCCACTGTCGAGAAAAGTGCCAATAGCATCTAGCAAAATCAATCCATATAGGATGCTTATTGTGGCACGGCTTGTTATTCTGGGTTTCTTCCTCAGATATAGAATCATGCACCCAGTACATGATGCAATAGGGCTATGGCTAACCTCTATTGTATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACTTACCTGGATCGCCTTTCAATCAGGTATGAGAGGGAAGGTGAACCCAATATGCTTGCCCCTGTAGATGTCTTCGTTAGTACAGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAAGTTTCATGCTATATTTCTGATGATGGAGCTTCGATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTGCAAGAAAGTGGGTACCTTTCTGCAAGAAATTTAACATAGAACCTCGAGCACCAGAGATGTACTTCTGTGAGAAGATTGATTACCTAAAGGATAAAGTTCAGCCCACCTTCGTTAAAGAGCGTCGAGCTATGAAGAGAGAATATGAAGAATTTAAAGTTAGGATCAATGCAATGGTCGCAAAAGCTCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCTGGAAACAACACTAAGGACCACCCAGGAATGATTCAAGTCTTTCTTGGTCACAGTGGAGGCTTTGACACTGAAGGAAACTTGCTTCCTCGTCTTGTCTACGTCTCAAGAGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTCATTCGGGTATCTGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTAGATTGTGATCATTATGTCAATAACAGCAAGGCCGTGAAAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAATTTCCTCAAAGGTTTGATGGTATTGATAGGCACGATCGTTATGCAAACAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGAATTCAAGGCCCTGTATATGTGGGCACGGGGTGTGTGTTCAGGAGGCAAGCTTTATATGGCTACAATCCTCCCAAGGGTCCTAAGCGCCCAAAGATGGTAAGCTGCGACTGCTGCCCGTGTTTCGGGCGCCGCAAGAAGCTTAAGTATGCCAATGATGCAAATGGAGAGGCTATAACCCTACAAGGAATGGATGAGGACAAAGAGTTGCTGAAGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACTCTAATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGCCCAGCAGCACTGCTTAAAGAAGCCATTCATGTCATCAGTTGCGGCTACGAAGACAAAACTGAATGGGGAACTGAGCTCGGTTGGATCTATGGATCTATCACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGGGGTTGGAGGTCTATTTACTGTATGCCGAAGAGAGATGCATTCAAGGGTACAGCTCCTATTAACTTGTCAGATCGTCTCAACCAGGTGCTTCGTTGGGCTCTTGGTTCCATTGAGATCTTTTTCAGTCGCCACTGCCCAGCTTGGTATGGCTACAAAGGGGGAAATAATCTCAAGTGGCTTGAGAGATTTGCCTATGTCAACACAACTGTCTACCCCTTCACCTCCCTTCCTCTACTTGCCTACTGTATACTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTGGGCTAGTTTGTACTTCATtgctctcttcctttcgatcTTCGCAACCGGTATTCTGGAGTTGAGATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTGTTTGCTGTTATACAAGGTCTTCTCAAAGTTCTGGGTGGAATTGACACCAACTTCACAGTTACATCAAAGGCAACAGATGATGAGGAATTTGGAGAATTATACACATTTAAATGGACAACTCTCCTAATCCCTCCAACCACTATCTTAATCATCAACCTTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGATACCAGTCCTGGGGACCTCTATTTGGAAagctcttcttctccttctggGTGATTGTCCATCTGTATCCATTCCTAAAGGGATTGATGGGTCGCCAAAACCGCACACCCACCATTGTTGTCATATGGTCAGTGCTTTTGGCTTCTATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTCATGAAAACTATGGGACCTGATACGAAGCAATGTGGAATCAACTGCTG 3122 0.4475 MEASAGLVAGSYNRNELVVIHGHEEPKPLKNLDGQVCEICGDNVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFKIDDEKNTHNQVAEAMLQGKMSYGRGPEDEENAQYPPIIAGGTRSRVVSGEIPITSHGYGEQMLSSSLHKRVHPYPVSEPGSERWDDKKEDGWKDSMDDWKLQQGNLGPEPDDDPDAAMLDEARQPLSRKVPIASSKINPYRMLIVARLVILGFFLRYRIMHPVHDAIGLWLTSIVCEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKVSCYISDDGASMCTFEALSETAEFARKWVPFCKKFNIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAMVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGFDTEGNLLPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVKEAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKLKYANDANGEAITLQGMDEDKELLKSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRDAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPAWYGYKGGNNLKWLERFAYVNTTVYPFTSLPLLAYCILPAVCLLTDKFIMPPISTWASLYFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTMGPDTKQCGINC 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00856 1040 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Bva05g00856 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Bva05g00856 1040 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Bva05g00856 1040 MobiDBLite consensus disorder prediction 187 209 - -
Bva05g00856 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 623 IPR029044 -
Bva05g00856 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 863 IPR029044 -
Bva05g00856 1040 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Bva05g00856 1040 Pfam Cellulose synthase 332 1034 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bva05g00856 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1040 - -
Bva05g00856 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1040 - -
Bva05g00856 1040 MobiDBLite consensus disorder prediction 183 229 - -
Bva05g00856 1040 SUPERFAMILY RING/U-box 21 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00856 Bva-Chr5 4279570 4284240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00856 1 1040 Cell Wall Biosynthesis AT5G17420 84.549 0.0 1826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00856 K10999 - gmx:100815436 2002.25