Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00820 ATGATTATGCAGCCTCGTAGCAGAGAAATGCAAGGAATAAACTCCCTCTTAAACTCTTCTCAGATTTCTGTGCAGGACCTCCATAACAGTCAccatcaccaccaccaccagcaGCAGATCCAAGATTCTCAGATGCAACATCACCAGGTCAACCAGAGCTCCGGTCACTTCGATCCCACCTCCAACGACGATTTCCTCGAACAAATGCTCTCCGTGCTTCCTTCCTGCTCCTGGCCTGAGCTCAACCCCAAGCCCTTGTGGGACCTTAACCCTGCCAATTCCGTCCCCATAAATGGCTCTGATATCAAGCCTACAGACCTCACAGATGACACGCCTCCCTCTAACGCTGATAATGTTGCTTTTCAATACGATGAGCATGCCAACTTGGCCTCCAAGTTCCGAAACCACCAGATCAGTAGCGGCTCACCGTCATCTAAGTCCACGGCGGCCGCTTTGATGCTTCACCAGCAGCTTCTTATGTCTAGAGGTGTCTCTGCCGCGGAGTCTGGCCTTCTTCAGATGCCTTTATCGTTGGGTGGCGGAGACTTTGAGCGATCTCGCAACGACGTCGTTGACGGTTCGCCGTTTAAAGCGTCTAATCCGGTTAATGAAAGTTCAGTCCAAGCTCTGTACAATGGGTTCGCCGGATCTCTGCACGGCACTGGTCAATCTTCGAACCAGACTCAGCATTTTCATCATCCTCagGGAGGTCTGATGCAGGGGCAGAATTTTGCGGGTTCAGGGGTGGCGACGAACCAAACTCCAGCGAGTGGGACGGCAAACGGTGCTCCGGCGCAACCGAAACAGAGGGTTAGAGCTAGGAGAGGTCAAGCGACGGACCCACATAGCATCGCCGAGAGGCTACGCAGGGAGAGAATTGCAGAGAGAATGAAGGCCCTGCAGGAACTGGTTCCCAATGCTAACAAGACAGACAAGGCCTCAATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTTGCTCCCCTAGTCGCTGATATGTCCCCTgagGGAGGAGGCGGTGACTGCATCCAAGCAGCCGCGAACGGTGGTCGAAACTCCAACAGCAACCAAACGGCGTCGTCTTCCAACGACGGCCTCACCATGACAGAGCACCAAGTCGCAAAGCTCATGGAAGAAGACATGGGATCCGCCATGCAGTACCTTCAGGGCAAAGGTCTCTGCCTCATGCCCATCTCCCTCGCTACCGCTATTTCTGCCGCCACGTGTCACTCTAGGAACCCACTCATCCCATCGAACGGCGAAGGGCCCTCCTCTCCCAGCATGTCCGTGCTGACTGTGCAGTCAGCTGCTGTGGGTAACGGCGGCACTGACAGCTCCGTTAAAGATGCTGCGTCCGTTTCGAAGCCATG 1424 0.533 MIMQPRSREMQGINSLLNSSQISVQDLHNSHHHHHHQQQIQDSQMQHHQVNQSSGHFDPTSNDDFLEQMLSVLPSCSWPELNPKPLWDLNPANSVPINGSDIKPTDLTDDTPPSNADNVAFQYDEHANLASKFRNHQISSGSPSSKSTAAALMLHQQLLMSRGVSAAESGLLQMPLSLGGGDFERSRNDVVDGSPFKASNPVNESSVQALYNGFAGSLHGTGQSSNQTQHFHHPQGGLMQGQNFAGSGVATNQTPASGTANGAPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSPEGGGGDCIQAAANGGRNSNSNQTASSSNDGLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRNPLIPSNGEGPSSPSMSVLTVQSAAVGNGGTDSSVKDAASVSKP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00820 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Bva05g00820 474 MobiDBLite consensus disorder prediction 218 264 - -
Bva05g00820 474 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 436 - -
Bva05g00820 474 MobiDBLite consensus disorder prediction 42 63 - -
Bva05g00820 474 MobiDBLite consensus disorder prediction 365 384 - -
Bva05g00820 474 SMART finulus 283 332 IPR011598 GO:0046983
Bva05g00820 474 MobiDBLite consensus disorder prediction 433 474 - -
Bva05g00820 474 MobiDBLite consensus disorder prediction 27 63 - -
Bva05g00820 474 Gene3D - 272 334 IPR036638 GO:0046983
Bva05g00820 474 PANTHER TRANSCRIPTION FACTOR BHLH69 58 436 - -
Bva05g00820 474 MobiDBLite consensus disorder prediction 218 282 - -
Bva05g00820 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 337 IPR036638 GO:0046983
Bva05g00820 474 Pfam Helix-loop-helix DNA-binding domain 282 327 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00820 Bva-Chr5 4114624 4118082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00820 256 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 67.234 5.29e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g00820 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00820 - - vvi:100243222 583.948