Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00818 ATGTCATCTCAAACCTCAAAAGGTGAGCTGCTGCGTCTGAGATATTTGTGGCCTCCATCCATACCCGGCAAGGGGCAAACTCTTCATATTAAGGGCAGCAGAAAAATGTCAGGAGAAGAAGCTTCTGTAGCACCTGCTGAGGCTTCAGCACCTTTAGGTGAGGATATGGACATCATGACAGCATTACAGCTTGTGTTGAAGAAGTCACGAGCCCACGGTGGGCTTGCCCGAGGACTCCATGAAGGTGCCAAGGTGATTGAAAAGCATGCTGCACATCTCTGTGTGTTAGCTGAGGACTGTGATCAACTAGATTATGTTAAAGTGATCAAGGGACTTTGTGCTGATCACAATGTCAAGTTGATAACTGTGGCTAAAGCTAAAACTCTTGGTGAATGGGCTGGGTTGTGCAAGATTGATTCTGAGGGAAAAGCAAGGAAAGTAATCGGTTGCTCTTGTGTTGTTGTCAAGGACTTCGGAGAGGAGTCACCAGCATTAGATGTTGTTCAGCAATATATTAAGGCCCAATA 527 0.4592 MSSQTSKGELLRLRYLWPPSIPGKGQTLHIKGSRKMSGEEASVAPAEASAPLGEDMDIMTALQLVLKKSRAHGGLARGLHEGAKVIEKHAAHLCVLAEDCDQLDYVKVIKGLCADHNVKLITVAKAKTLGEWAGLCKIDSEGKARKVIGCSCVVVKDFGEESPALDVVQQYIKAQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00818 175 SUPERFAMILY L30e-like 55 173 IPR029064 -
Bva05g00818 175 PANTHER 40S RIBOSOMAL PROTEIN S12 36 174 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 61 154 IPR004038 -
Bva05g00818 175 PRINTS Ribosomal protein S12E family signature 120 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 PRINTS Ribosomal protein S12E family signature 79 95 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 PRINTS Ribosomal protein S12E family signature 65 78 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 PRINTS Ribosomal protein S12E family signature 145 158 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 ProSitePatterns Ribosomal protein S12e signature. 61 79 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g00818 175 Gene3D - 41 175 IPR029064 -
Bva05g00818 175 PANTHER 40S RIBOSOMAL PROTEIN S12 36 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00818 Bva-Chr5 4104154 4106505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00818 54 175 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 68.033 9.23e-62 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00818 K02951 - sind:105169110 229.18