Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00796 ATGTCAGGGTGGGACGAAGGAGCCGTCTACTACAGCGACCAAGCTCACTCATGGGATGACGGCACCGGCCGTGGCGGAGACACCGAAGGCACCCCATCCAACCATACCGTCCTCCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACCGAGAAGAATGTATTCCCTTACAGAGAAAGCCTTGTCCATAATCCCAAGTATCTTCTCATTGACATGGAAGATCTTGATGCCTTCGATGCCGATTTACCTGCCAAACTCCGCTCAGCCCCCGCCGATTACCTGCCCCTGTTTGAGATGGCGGCGGCGCAGGTTTTGGTGAGTTTGAAGGCCAAAGTTGCTGGGGATACTGGAGTTATGGAGGATCCGGTAACCGGAGATGTTCAGATTTTGCTCACTTCCAAGGAGGATCCAGTGTCTATGAGATCCCTTGGCgcCCAATATGTATCAAAGCTTGTTAAAATTGCTGGGATTACGATTGCTGCTTCAAGGACTAAGGCAAAGGCAACTTACGTCACCTTAATTTGTAAGAACTGCAAAAAGGGCAAGCAAGTACCATGTCGTCCAGGACTTGGCGGGGCTGTTGTCCCTCGTTCATGTGATCATGTTCCTCAGGCAGGGGAAGAACCATGCCCAATTGATCCATGGATTGTGGTGCCTGATAAAAGCAAGTATGTTGATCAACAGACCTTGAAACTACAAGAAAATCCCGAGGATGTTCCAACTGGGGAGCTTCCTAGAAACATACTTCTCTCTGTGGATCGCCATCTTGTTCAAACAGTAGTACCTGGCTCAAGATTGACAATCATAGGAATCTATAGCATCTACCAAGCCTCTAATTCTTCTACATCCCACAAAGGAGCAGTAGCAATTAGGCAGCCTTATATCAGGGTTGTAGGAATAGAAGAAGCAAATGAGGCCAAGTCTGGAGGTCCAGCTGCATTTACACCTGAGGAAATAgaagaattcaaaaaatttgctACTGAACCTGATGCATACAAGAATATATGCGCTAAGATAGCTCCCTCTATATTTGGTCACGATGACGTTAAAAAGGCTGTGGCTTGTCTTTTGTTTGGAGGGTCAAGAAAGAATTTGCCAGATGGAGTCAAGTTAAGAGGTGATATCAATGTGTTGCTCCTTGGGGATCCATCTACGGCAAAGTCACAGTTTCTcaaatttgttgaaaagaCAGCTCCGGTTGCTGTTTATACTTCAGGAAAAGGCTCATCCGCTGCTGGTCTCACGGCTTCTGTAATCCGAGATAGCAGCTCTCGCGAGTTTTATCTTGAAGGAGGGGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGACCAGAAGACAGGGTTGCTATTCATGAAGCCATGGAACAACAAACAATATCCATAGCCAAAGCAGGAATAACAACTGTCCTTAATTCAAGAACTTCTGTGCTTGCTGCTGCTAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACGACTATTCTTTCTAGGTTTGATTTAATCTTTATTGTGAAGGACATCAGAATGTATAGTCAAGATAAGGTCATAGCGAGTCATATCATAAAGATTCATGCATCGGCTGATGCAACCATTGGTGAGGGTAGAGCTTCTAAAGAAGAGAGCTGGTTGAAGAGGTACATTCACTATTGTCGAACTCAATGCCACCCTCGTCTATCAGAGTCTGCAGCAACGTTACTACAGAAtaattatgtgaaaataaGACAGgATATGAGGCAACAGGCAAATGAAACTGGGGAAGCTGCCGCAATACCCATTACCGTAAGGCAGTTGGAAGCTATCGTTAGGTTGAGTGAAGCACTCGCAAAGATGAAACTATCTCATCTTGCCACCGAGGAGAATGTGCAAGAAGCAATAAGGCTTTTCACTGTTTCCACAATGGATGCAGCTAGGTCTGGAATAAACCAGCAAGTAAATCTTACACCCGAAATGGCCAATGAAATAAAGCAAGCTGAAACCCAGATAAAGAGAAGAGTTGGGATTGGGAACCACATATCAGAAAGAAGGCTAATTGATGATCTCAGCAGAATGGGAATGAATGAATCAATTGTGAGAAGAGCACTTATAATCATGCATCAGAGAGACGAAGTTGAATACAAACGAGAAAGGCGTGTTATATTCCGGAAAGCATG 2201 0.4412 MSGWDEGAVYYSDQAHSWDDGTGRGGDTEGTPSNHTVLQKFKEFIRNFETEKNVFPYRESLVHNPKYLLIDMEDLDAFDADLPAKLRSAPADYLPLFEMAAAQVLVSLKAKVAGDTGVMEDPVTGDVQILLTSKEDPVSMRSLGAQYVSKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQAGEEPCPIDPWIVVPDKSKYVDQQTLKLQENPEDVPTGELPRNILLSVDRHLVQTVVPGSRLTIIGIYSIYQASNSSTSHKGAVAIRQPYIRVVGIEEANEAKSGGPAAFTPEEIEEFKKFATEPDAYKNICAKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKVIASHIIKIHASADATIGEGRASKEESWLKRYIHYCRTQCHPRLSESAATLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAARSGINQQVNLTPEMANEIKQAETQIKRRVGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEVEYKRERRVIFRKA 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 167 179 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 643 660 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 567 582 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 291 303 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 141 156 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 473 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 372 387 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 432 446 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 484 496 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 PRINTS Mini-chromosome maintenance (MCM) protein family signature 511 519 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 61 679 - -
Bva05g00796 733 Pfam MCM P-loop domain 319 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 Gene3D - 312 668 IPR027417 -
Bva05g00796 733 Pfam MCM N-terminal domain 39 110 IPR027925 -
Bva05g00796 733 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 61 679 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 Gene3D - 167 225 - -
Bva05g00796 733 ProSiteProfiles MCM family domain profile. 331 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 Gene3D - 140 275 IPR012340 -
Bva05g00796 733 Pfam MCM OB domain 140 275 IPR033762 -
Bva05g00796 733 Gene3D - 33 117 - -
Bva05g00796 733 Pfam MCM AAA-lid domain 560 648 IPR041562 -
Bva05g00796 733 SUPERFAMILY Nucleic acid-binding proteins 40 297 IPR012340 -
Bva05g00796 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 649 IPR027417 -
Bva05g00796 733 SMART mcm 136 650 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bva05g00796 733 ProSitePatterns MCM family signature. 440 448 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bva05g00796 733 CDD MCM5 334 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00796 Bva-Chr5 4014172 4019362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00796 1 733 Core DNA Replication Machinery Family AT2G07690 78.581 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00796 K02209 - jre:109019482 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00796 05 4014172 4019362 Bva05g00796 05 4014172 4019362 ECH