Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00788 ATGGCTTTTCACGATCATCTTCCTCATGAAATGGCTTTTCAGCCTTTCACTGATGAACAACAGTTAAGTCAAAACAGAGACGTGCAGAGGCTTCTACCACTGTCTTCCGCCGCCACCGGCGGtggtggaggaggaggaggagctGCACCAACTTGGCTGAATAACACCACTCTTCGGCAGCAGAATTTCTTCCACTTACAACCAGAATCGTCCACTCAAACCGGCGACGATGTCCGGGGCTTAATAGGCTCCGATAAAAGCATCGATCGCAGTGATCGGAACCGGACCCAGAGCAATTGTGAATCCGAGGATTTAAGAGAATACAAAGCAGATATTTTGGGACACCCTTTGTACGAACAGCTCCTATCAGCCCATGTTTCATGTTTAAGAATAGCCACACCGGTAGACCAGCTGCCTAGGATCGATGCCCAGCTGCAGCAGTCACAGCACGTGGTGGAAAAATACTCTGGTGTCGGAAATGCGGTGGTCAATGAGAAGGAACTCGATCAGTTTATGACACATTATGTTCTATTGCTTTGTGCCTTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCAGTGATGGCATGTTGGGAGCTTGAGCAGTCTCTACAGAGCTTGACTGGTGTATCTCCTGGAGAAGGGACAGGTGCAACAATGTcggatgatgaagatgatcaaGCAGATAGCAACGTTAACTTATATGATGGGAGTCTGGATGGTGCAGACAGCcttggcttcggtcctcttgTTCCCACCGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGGCATGAGTTGAAGCATGATCTAAAACAGGATTACAAGGAGAAAATTGTGGAcataagagaagaaattatgagaaagagaagagcGGGAAAGCTGCCGGGTGACACCACTTCCACTTTAAAAGCTTGGTGGCAATCACATTCTAAGTGGCCCTACCCAACTGAGGAAGACAAGGCAAGATTGGTGCTGGAAACTGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATAAAccaaaggaaaaggaattgGCACACTACCCCTTCAACCTCCAATTCCTCCAAAAGCAAGCGCAAGAGcaATGCAGGCGAAAACGGCAACCAGAGCTTCGTGTG 1136 0.4278 MAFHDHLPHEMAFQPFTDEQQLSQNRDVQRLLPLSSAATGGGGGGGGAAPTWLNNTTLRQQNFFHLQPESSTQTGDDVRGLIGSDKSIDRSDRNRTQSNCESEDLREYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQHVVEKYSGVGNAVVNEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSNVNLYDGSLDGADSLGFGPLVPTESERSLMERVRHELKHDLKQDYKEKIVDIREEIMRKRRAGKLPGDTTSTLKAWWQSHSKWPYPTEEDKARLVLETGLQLKQINNWFINQRKRNWHTTPSTSNSSKSKRKSNAGENGNQSFV 378
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00788 378 SMART HOX_1 292 357 IPR001356 GO:0003677
Bva05g00788 378 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Bva05g00788 378 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Bva05g00788 378 MobiDBLite consensus disorder prediction 350 378 - -
Bva05g00788 378 Pfam KNOX1 domain 108 149 IPR005540 GO:0003677|GO:0005634
Bva05g00788 378 Pfam ELK domain 270 291 IPR005539 GO:0003677
Bva05g00788 378 SUPERFAMILY Homeodomain-like 292 357 IPR009057 -
Bva05g00788 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 371 - -
Bva05g00788 378 Gene3D - 291 352 - -
Bva05g00788 378 SMART ELK_2 270 291 IPR005539 GO:0003677
Bva05g00788 378 Coils Coil 276 296 - -
Bva05g00788 378 MobiDBLite consensus disorder prediction 67 101 - -
Bva05g00788 378 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Bva05g00788 378 MobiDBLite consensus disorder prediction 212 231 - -
Bva05g00788 378 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Bva05g00788 378 CDD homeodomain 293 352 IPR001356 GO:0003677
Bva05g00788 378 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 40 371 - -
Bva05g00788 378 SMART KNOX2_2 157 213 IPR005541 GO:0003677|GO:0005634
Bva05g00788 378 Pfam KNOX2 domain 163 212 IPR005541 GO:0003677|GO:0005634
Bva05g00788 378 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva05g00788 Bva-Chr5 3964621 3968386 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00788 69 372 Homeobox Transcription Factor Family AT5G11060 74.038 3.81e-163 461
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva05g00788 KNOX2 5.7e-19 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00788 - - gmx:100816347 602.438
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00788 05 3964621 3968386 Bva06g00889 06 7715248 7719478 BWGD
Bva05g00788 05 3964621 3968386 Bva05g00788 05 3964621 3968386 ECH