Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva05g00788 | ATGGCTTTTCACGATCATCTTCCTCATGAAATGGCTTTTCAGCCTTTCACTGATGAACAACAGTTAAGTCAAAACAGAGACGTGCAGAGGCTTCTACCACTGTCTTCCGCCGCCACCGGCGGtggtggaggaggaggaggagctGCACCAACTTGGCTGAATAACACCACTCTTCGGCAGCAGAATTTCTTCCACTTACAACCAGAATCGTCCACTCAAACCGGCGACGATGTCCGGGGCTTAATAGGCTCCGATAAAAGCATCGATCGCAGTGATCGGAACCGGACCCAGAGCAATTGTGAATCCGAGGATTTAAGAGAATACAAAGCAGATATTTTGGGACACCCTTTGTACGAACAGCTCCTATCAGCCCATGTTTCATGTTTAAGAATAGCCACACCGGTAGACCAGCTGCCTAGGATCGATGCCCAGCTGCAGCAGTCACAGCACGTGGTGGAAAAATACTCTGGTGTCGGAAATGCGGTGGTCAATGAGAAGGAACTCGATCAGTTTATGACACATTATGTTCTATTGCTTTGTGCCTTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCAGTGATGGCATGTTGGGAGCTTGAGCAGTCTCTACAGAGCTTGACTGGTGTATCTCCTGGAGAAGGGACAGGTGCAACAATGTcggatgatgaagatgatcaaGCAGATAGCAACGTTAACTTATATGATGGGAGTCTGGATGGTGCAGACAGCcttggcttcggtcctcttgTTCCCACCGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGGCATGAGTTGAAGCATGATCTAAAACAGGATTACAAGGAGAAAATTGTGGAcataagagaagaaattatgagaaagagaagagcGGGAAAGCTGCCGGGTGACACCACTTCCACTTTAAAAGCTTGGTGGCAATCACATTCTAAGTGGCCCTACCCAACTGAGGAAGACAAGGCAAGATTGGTGCTGGAAACTGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATAAAccaaaggaaaaggaattgGCACACTACCCCTTCAACCTCCAATTCCTCCAAAAGCAAGCGCAAGAGcaATGCAGGCGAAAACGGCAACCAGAGCTTCGTGTG | 1136 | 0.4278 | MAFHDHLPHEMAFQPFTDEQQLSQNRDVQRLLPLSSAATGGGGGGGGAAPTWLNNTTLRQQNFFHLQPESSTQTGDDVRGLIGSDKSIDRSDRNRTQSNCESEDLREYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQHVVEKYSGVGNAVVNEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSNVNLYDGSLDGADSLGFGPLVPTESERSLMERVRHELKHDLKQDYKEKIVDIREEIMRKRRAGKLPGDTTSTLKAWWQSHSKWPYPTEEDKARLVLETGLQLKQINNWFINQRKRNWHTTPSTSNSSKSKRKSNAGENGNQSFV | 378 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva05g00788 | 378 | SMART | HOX_1 | 292 | 357 | IPR001356 | GO:0003677 | |
Bva05g00788 | 378 | ProSiteProfiles | 'Homeobox' domain profile. | 290 | 353 | IPR001356 | GO:0003677 | |
Bva05g00788 | 378 | ProSiteProfiles | ELK domain profile. | 270 | 290 | IPR005539 | GO:0003677 | |
Bva05g00788 | 378 | MobiDBLite | consensus disorder prediction | 350 | 378 | - | - | |
Bva05g00788 | 378 | Pfam | KNOX1 domain | 108 | 149 | IPR005540 | GO:0003677|GO:0005634 | |
Bva05g00788 | 378 | Pfam | ELK domain | 270 | 291 | IPR005539 | GO:0003677 | |
Bva05g00788 | 378 | SUPERFAMILY | Homeodomain-like | 292 | 357 | IPR009057 | - | |
Bva05g00788 | 378 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 40 | 371 | - | - | |
Bva05g00788 | 378 | Gene3D | - | 291 | 352 | - | - | |
Bva05g00788 | 378 | SMART | ELK_2 | 270 | 291 | IPR005539 | GO:0003677 | |
Bva05g00788 | 378 | Coils | Coil | 276 | 296 | - | - | |
Bva05g00788 | 378 | MobiDBLite | consensus disorder prediction | 67 | 101 | - | - | |
Bva05g00788 | 378 | SMART | KNOX1_2 | 106 | 150 | IPR005540 | GO:0003677|GO:0005634 | |
Bva05g00788 | 378 | MobiDBLite | consensus disorder prediction | 212 | 231 | - | - | |
Bva05g00788 | 378 | Pfam | Homeobox KN domain | 310 | 349 | IPR008422 | GO:0003677|GO:0006355 | |
Bva05g00788 | 378 | CDD | homeodomain | 293 | 352 | IPR001356 | GO:0003677 | |
Bva05g00788 | 378 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 40 | 371 | - | - | |
Bva05g00788 | 378 | SMART | KNOX2_2 | 157 | 213 | IPR005541 | GO:0003677|GO:0005634 | |
Bva05g00788 | 378 | Pfam | KNOX2 domain | 163 | 212 | IPR005541 | GO:0003677|GO:0005634 | |
Bva05g00788 | 378 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva05g00788 | Bva-Chr5 | 3964621 | 3968386 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva05g00788 | 69 | 372 | Homeobox Transcription Factor Family | AT5G11060 | 74.038 | 3.81e-163 | 461 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Bva05g00788 | KNOX2 | 5.7e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva05g00788 | - | - | gmx:100816347 | 602.438 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva05g00788 | 05 | 3964621 | 3968386 | Bva06g00889 | 06 | 7715248 | 7719478 | BWGD | |
Bva05g00788 | 05 | 3964621 | 3968386 | Bva05g00788 | 05 | 3964621 | 3968386 | ECH |