Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00785 ATGGCTGGCATGCTTCCGGGAGTTGAATGCGCTCGACGGAGACGGTTCCATGATTCACCGGCTATGGCTGCCCATAATTCCACAAGGCGCTCTTCTTTCTGTTTGTATACAAGCAACCATGAATCTTCTCTTTCCTCGTCCTCTTCACTGCAAAGAAGCATATTACACCAGGCACGCCCAAATGAGATGCTGGGAGAAGCAGCCAGAGAAGCCAAAGAGAGATTGGATGAGAGGTTAAGAGCACAAAGTaaatcagaaaacaaaagGCAAAACAGCAAAGAGAATTTGAGATCTGCAGTGTCTGGAGAGTTGCAGATAGAAGTGTACGggtcaaagaaaaatgtgtcAAGGAAGTTCAGTTGGACCAAATTGAGGTGGAAGGCATCGGAGCAAGATGATTGTGCAGTTTGCCTAGAGGCATTTAGGGTTGGTGAGACGCTGATCCACCTCCCCTGTGCTCATAGGTTCCATTCAAAATGCTTAGAGCCATGGCTAGAAAATAATACCCATTGCCCATGCTGCAGGAATGTTGTCACTTCCCGGTA 545 0.4495 MAGMLPGVECARRRRFHDSPAMAAHNSTRRSSFCLYTSNHESSLSSSSSLQRSILHQARPNEMLGEAAREAKERLDERLRAQSKSENKRQNSKENLRSAVSGELQIEVYGSKKNVSRKFSWTKLRWKASEQDDCAVCLEAFRVGETLIHLPCAHRFHSKCLEPWLENNTHCPCCRNVVTSR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00785 181 MobiDBLite consensus disorder prediction 69 93 - -
Bva05g00785 181 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 178 - -
Bva05g00785 181 SMART ring_2 134 174 IPR001841 -
Bva05g00785 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 181 IPR013083 -
Bva05g00785 181 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 178 - -
Bva05g00785 181 Pfam Ring finger domain 132 175 IPR001841 -
Bva05g00785 181 MobiDBLite consensus disorder prediction 69 97 - -
Bva05g00785 181 ProSiteProfiles Zinc finger RING-type profile. 134 175 IPR001841 -
Bva05g00785 181 CDD RING-H2_PA-TM-RING 133 175 - -
Bva05g00785 181 SUPERFAMILY RING/U-box 120 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00785 Bva-Chr5 3952458 3953544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00785 1 85 C3H Transcription Factor Family AT2G15580 47.000 1.35e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00785 - - gmx:100527583 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00785 05 3952458 3953544 Bva05g00785 05 3952458 3953544 ECH