Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00783 ATGGGTGCGACCAGTAGTCGACCGGGGTCTCGCCCTTCTACTTCCCGAGTCAACCGCACCAACCGCTTCAGACTATCCTCTCTTGTCTGTGGCGCCTCTTCCTCCCGTTCTACTTATGAGATGGAAGATCATCCAACTGAACTTCAGGTAGATTCTGCAACAGACTTTCAGAAAGTCAGTGAGGAATCATCTTTACAATGTTGTACCGAAGCTAGGCTTAGTAGTGGCACACATGGTGAAACTGCAACCTCGTCTAATACCAGGAATGGATTCAgtgagaattttttctttgaaagttCTGCAAGAAATGTTGCCGTTGGTAATCAGAGGAATTGTCTGTGCAAAAGTAAGGAGATAGTTCCTCCTCACAAGGTAAGTGCTGATCATGAATCTTTTAGAGAAAGTATCAACACAGCTAGTACTTCTTTTGTAGAACATCAGTCTTCAGATCCAGTCTCTGTAAATGTTCCTGCTAACAAGGATGTAGTCTGTAATGTTGGTAATTCAGTTGATAGTGGTGTCAACCAAATCTGTGAGACAATGCATCCAAGGAGCTCAACCCCTCAAGAGCATGGAGGCTCCAGTTCTGATGAAATTTCTGTTGAGAATCCCGTGGGTGCAGTTTTAGCTGTCCAGAATCCTGTTCATGTTTCCAATTTACCAGTAACGTCTCAGCTTCCTGAAAATGAACCTTGTCAAGAGTCTATTCCTTCAGGTTTAGGAATTATGTCCAATAGGGAAAGAGGACAAGGAACTGAAAATGTGCTTCATCTTGATGTGGTCACTATATCTTCCAACATTTTGTTTGGCGGCAATGCTGATGCCACTGATCGTGATGCCAGAAGGAATGGTAGAAGACTATTTTGGGATGCTTTTTCACAACGTGGCTCTAGAAGGTTAGTTGATTCTCCGACTATTGTTTTCTCAACTGGGGATGCTGATGATCCAGAAACCCAAGATCGATGGCTTCTTGATATGAGTGCTGATTTCTCAAATGATGGGCTTGGAGGTGAGTCTGGATACACAGGAAGCAGAATTCACAGATTGAATGAACGAATGCGGCACTCTAGATCAGAGATCTGGGGAAGACTTCGTGGAGGCCTTGATGAGATTGGTCGTTGGAATGCTTCTTGCCCATTGGGACTCCACCCTGATGGCATGTGCCTATGTGATTCCTTCTCCGTGACAGAAGAATCTAGCACCCGAGCAAGTATATCAAGAATATTCTTGCTTGCTGAAGCTTTGTTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTTTCACTTTCCCTGTCCATGGTCTCACTCCCAGCACCAGAATCAATTGTTGactcttttcctttgaaaaGTCATAAGAAAGCCGATTCAGCTAATGGTGGCAATGATGCTGAACAATGTTACATATGCTTGTCGGAGTATGAAGAAGGAGACAAAATAAGAGTGCTTCCTTGCAACCACGAGTATCACATGTCATGTGTTGATAAGTGGCTTAAGGAGATACATGGggTATGCCCTGTTTGTCGTGGGAATGTTTGTGGAGGGTTCACTGACTCTTCTGCCGCTAACGCAGAAATTCCATCTCACTG 1586 0.4338 MGATSSRPGSRPSTSRVNRTNRFRLSSLVCGASSSRSTYEMEDHPTELQVDSATDFQKVSEESSLQCCTEARLSSGTHGETATSSNTRNGFSENFFFESSARNVAVGNQRNCLCKSKEIVPPHKVSADHESFRESINTASTSFVEHQSSDPVSVNVPANKDVVCNVGNSVDSGVNQICETMHPRSSTPQEHGGSSSDEISVENPVGAVLAVQNPVHVSNLPVTSQLPENEPCQESIPSGLGIMSNRERGQGTENVLHLDVVTISSNILFGGNADATDRDARRNGRRLFWDAFSQRGSRRLVDSPTIVFSTGDADDPETQDRWLLDMSADFSNDGLGGESGYTGSRIHRLNERMRHSRSEIWGRLRGGLDEIGRWNASCPLGLHPDGMCLCDSFSVTEESSTRASISRIFLLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKADSANGGNDAEQCYICLSEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPVCRGNVCGGFTDSSAANAEIPSH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00783 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 526 - -
Bva05g00783 528 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g00783 528 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 526 - -
Bva05g00783 528 Pfam Ring finger domain 465 508 IPR001841 -
Bva05g00783 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 512 IPR013083 -
Bva05g00783 528 ProSiteProfiles Zinc finger RING-type profile. 466 508 IPR001841 -
Bva05g00783 528 SUPERFAMILY RING/U-box 460 511 - -
Bva05g00783 528 SMART ring_2 466 507 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00783 Bva-Chr5 3944642 3948324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00783 375 512 C3H Transcription Factor Family AT5G45290 53.595 1.15e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00783 - - gmx:100783604 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00783 05 3944642 3948324 Bva05g00783 05 3944642 3948324 ECH