Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00780 ATGTGTGTGCAAGACGCGGACCAAGTTGCCCAAGATATGGAGAAGAAGGAGAACCTCGACAACAGGAGGAAGTCATGGCCTTTGCATTGCGAGCTCTTGCCTGCCAAGATGCATAACTTGGAAAAAGGATCTCCCTTGAAATCTCCCAGTGATCGTGTAAGTTCTGGGAATTCATTTCCTCTGGAAAGCATATGTGAGGATACAGTGATTGCAGACATAAAACAGAATCCGATGAATTTCGTCCCCTCTCTTAGGTCTGGAGAGTGGTCAGATATAGGAGGTCGTCCTTATATGGAGGATACCCATATATGCATTGGAGACTTGGCAAAGAAGTTcggttttgattttcttagtGAGGAAGCTATATCATTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATTTGCCAAGAGTCATCGTTGAGGATGCCAACTTCCCTTTGGAGCTTGAGAGGGTGGTCACAAGGTCATTTTTGGAGACAGATGCTGCATTAGCAAAGACGTGTTCTCTTGAGTCTTCCCTTTCTTCTGGTACAACTGCACTAACAGCAATTATATTTGGAAGGTCATTACTTGTAGCCAATGCTGGAGACTGCCGAGCTGTTTTGTCCCGACAAGGAGTGGCTATAGAAATGTCCAAAGATCATAGACCATTTTGTAGCAAAGAGAGGAGACGGGTCGAGTCACTGGGTGGCTTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTGTGACACGTGCTCTTGGTGACTGGCATCTTGAAGGATTGAAGGAAATGAGTGAAAGAGGTGGACCATTGATTGCTGAGCCAGAACTTAAGCTGATAACGTTGACAAAAGAAGATGAGTTCTTGATAATTGGCAGTGATGGTATCTGGGATGTTTTCACTAGCCAAAATGCAGTTGATTTTGCTCGGAGGAGGCTTCAAGAGCATAATGATGTTAAACTATGCGGCAGGGAAATAGTGGAGGAAGCAATAAAGAGAGGATCAACAGACAATTTGACAGTGGTGATGGTGTGTTTTCACTCAGATCCACCGCCTCCTGTGGTGGTAGAAAGGCCAAGAGTCAGGAGAAGCATTTCTGCTGAGGGACTTCAGAATCTCAAGTGCTTTTTGGAAGGATA 1151 0.4431 MCVQDADQVAQDMEKKENLDNRRKSWPLHCELLPAKMHNLEKGSPLKSPSDRLESICEDTVIADIKQNPMNFVPSLRSGEWSDIGGRPYMEDTHICIGDLAKKFGFDFLSEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDANFPLELERVVTRSFLETDAALAKTCSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRQGVAIEMSKDHRPFCSKERRRVESLGGFIDDGYLNGQLGVTRALGDWHLEGLKEMSERGGPLIAEPELKLITLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKLCGREIVEEAIKRGSTDNLTVVMVCFHSDPPPPVVVERPRVRRSISAEGLQNLKCFLEG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00780 375 Gene3D - 64 345 IPR036457 -
Bva05g00780 375 Pfam Protein phosphatase 2C 89 334 IPR001932 -
Bva05g00780 375 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Bva05g00780 375 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g00780 375 ProSiteProfiles PPM-type phosphatase domain profile. 77 342 IPR001932 -
Bva05g00780 375 PANTHER PROTEIN PHOSPHATASE 2C 1 363 IPR015655 GO:0004722|GO:0006470
Bva05g00780 375 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 363 - -
Bva05g00780 375 SMART PP2C_4 67 340 IPR001932 -
Bva05g00780 375 CDD PP2Cc 77 342 IPR001932 -
Bva05g00780 375 SUPERFAMILY PP2C-like 69 343 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00780 Bva-Chr5 3931724 3935485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00780 65 375 PP2C-type Phosphatase Gene Family AT2G25620 61.905 1.31e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Bva05g00780 PP2C 6.7e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00780 K14803 - gmx:100782648 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00780 05 3931724 3935485 Bva06g00898 06 7752117 7755520 BWGD
Bva05g00780 05 3931724 3935485 Bva05g00780 05 3931724 3935485 ECH