Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00779 ATGGCGGAACAAACTGAGAAGGCTTTTCTGAAGCAGCCAAAAGTTTTTCTTAGctCAAAGAAATCTGGCAAGGGAAAAAGGCCTGGGAAAGGTGGCAATCGCTTCTGGAAAAGCATTGGGCTTGGATTTAAGACCCCCAGAGAAGCCACTGAAGGTACCTACATTGATAAGAAATGCCCCTTTACTGGCGCTGTTTCTATCCGGGGTCGTATTTTGGCTGGCACCTGTCACAGTGCTAAGATGACGAGAACTATCATTGTTAGAAGAAACTACCTTCATTACATCAAGAAGTACCAGAGATATGAGAAACGGCATTCAAACATTCCTGCTCATATATCACCATGCTTCCGTGTGAAGGAGGGAGATCATGTTATTATTGGTCAATGCAGGCCATTATCAAAGACAGTGAGGTTCAATGTCTTGAAAGTGATCCCAGCAGGATCTTCTGGTGGAGTGAAGAAGGCATTTACTGGAATATG 479 0.4384 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCPFTGAVSIRGRILAGTCHSAKMTRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00779 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bva05g00779 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Bva05g00779 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bva05g00779 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bva05g00779 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bva05g00779 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Bva05g00779 159 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 159 - -
Bva05g00779 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Bva05g00779 159 TIGRFAM uS17_arch: ribosomal protein uS17 53 143 IPR028333 -
Bva05g00779 159 Gene3D - 1 158 - -
Bva05g00779 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00779 Bva-Chr5 3927479 3929337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00779 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.937 1.74e-97 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00779 K02949 - tcc:18588897 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00779 05 3927479 3929337 Bva05g00779 05 3927479 3929337 ECH