Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00778 ATGGGAAGTTCTGGTACCGAGAAAATCCCGGTGGATGGCGTAACAGAAGGTTCTGAGACCACCAttgaaataaagataaaaacattGGATTCCCAAACTTACACTCTCAGAGTGGACAAACAAATGCCAGTGCCTGCTCTAAAAGAACAGATCGCTTCTGTAACTGGTGTTTTATCAGAGCAACAGCGCTTAATTTGCAGAGGGAAAGTTCTAAAGGATGACCAGCTACTCTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGCCAGGCAACCTGATTTACCATCACCAGGGAGTTTCCCGAACCATTCAGCAACTGACCCGGATTCGAGTACAAGCCATGTTCACAGTACTCAAGTAGCCCCTGGTGtattcattgaaatttttaatttgcctGTTCAGGGAGATGGAGTTTCTCCTGAAATCAACAGGATTGTTTCTGCTGTTTTAGGATCTATTGgactttcaaattttataagtggCAATGAAGAGATTGATGTCAGGGAGCAAGACTCCCAAGGGCTCGGAAGAACATCAGGTTCTAGTGGCATACCAGATTCATCTCATCCTCAAGTTGAACAAGCTGGTATGCGGAATTCATCTGATAGATTGCATTATAACTTTGGACTTCCAACAGCAGTCCCTTTGGGGCCTTTACAGCCTCCTGTCATTCCAGATTCCTTGACGACTCTGTCCCTGTATCTGAGTCATATAAGGCAGGAATTTGATGCCATTGTCAGAGGAGGAAATGATGTCCAAGCAACTGAGGCTCAGAGGAATGAAGAAATAGgatctttctcttctccacGTCCAGGTTCTATACCTGAGGCGCTCTCATCACCTGCTTCATTAGCAGAAGTCTTACTTTCTACCAGACAAATGTTCACTGAACAAGATGGCGAGTGCTTACTTcAACTTGCAAGGCAACTGGAGAATCAACAGAATGTGACTGATCCATTGTTGCGGTCAAGTACTCAGTCCAGGGCTTCGAGAACTGGAGTTCTATTATATAATCTTGGTGCATTTTTACTCGAGCTTGGTCGTACTTCCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTTGTTAATGGTGGACCTGCAGTTTTTATATCCCCATCTGGTCCTAATAATATCATGGTTCAGcctcttctttttcaatctGGAGGAAGCTTTGGTGCCATCCCCACGGGAACTGCCCAGTCTGGTTCTGGTTTAGGTAGTGGACTTGGTTCAAGTTTTTCCCCAAGGCTTATTGATATACAGATACAACAAGGTTCATCAACAACAATGCCCAATGTGGATCAAGAAGAACGTGGTGACACCATTTCTGCCTCAGCACAAAGAAATACTTCTGTAAGTCAAGCAGCCTCCAGACTTGCAGAAGATCAATCTTTTGCTGGGGAGTCAGGAGTACGGATAGTACCAATTAGAACCATGGTTGCAGCGGTACCTGGTTCCTCAGGTCGCTCACCTTCTGAATCATCTGGTAATCCTATAGGGCTTTACCATCCACTTCTTAGGAGATTTCAACATAGATCTTCTGGGCATGGCAATAGTGAACTGGGATCTCAATCATCTCGTCAGCATCAGCAGTCCATTCCTCTATCCACAATGCCAGGGCAAAGCAATGAAGATCCTGCAAGAAATGGATCCTTGCCAACTCCCAGCACAAGACAAGAGCCATCTGCTACCCGTAGTGTGAATATTAATATTCTCGCAGCTGGTAGTGCCCCAGTCAACCAAGATTCTGAGAGACAGATACCCGACAGTGTAGTTCAATTTATGAGGGCACTTATTATTAGTAGTGTCGTAGATTCCAGTCAACAGGAGACAACCGCCGTTACCTCAGATGATGCTGGAACATCGAGGGGTGCTGCTCATGTCCTCGAAGCCGAAGCTGGAGTTAGTGATGAAGGAACATTTTTGTCTGATCTACTACGTGGGATCATGCCCCTGATATCTCAACAAGCAGGATCTGAGATAAATGTTGCCCCAGAAACAGAGGCGGAAGAAGATGCTTCGGGGGTTCAAATGGGACAAGATTCTTCCACCCAGGTTGCAACTGATACCGGGACATCACGTAGACAAATTCACAGTGATTCTGAACCAAGCCCTCCTCCTAGTCCGAAACGGCAGAAGATGAATGATATCTG 2168 0.44 MGSSGTEKIPVDGVTEGSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPSPGSFPNHSATDPDSSTSHVHSTQVAPGVFIEIFNLPVQGDGVSPEINRIVSAVLGSIGLSNFISGNEEIDVREQDSQGLGRTSGSSGIPDSSHPQVEQAGMRNSSDRLHYNFGLPTAVPLGPLQPPVIPDSLTTLSLYLSHIRQEFDAIVRGGNDVQATEAQRNEEIGSFSSPRPGSIPEALSSPASLAEVLLSTRQMFTEQDGECLLQLARQLENQQNVTDPLLRSSTQSRASRTGVLLYNLGAFLLELGRTSMTLRLGQTPSEAVVNGGPAVFISPSGPNNIMVQPLLFQSGGSFGAIPTGTAQSGSGLGSGLGSSFSPRLIDIQIQQGSSTTMPNVDQEERGDTISASAQRNTSVSQAASRLAEDQSFAGESGVRIVPIRTMVAAVPGSSGRSPSESSGNPIGLYHPLLRRFQHRSSGHGNSELGSQSSRQHQQSIPLSTMPGQSNEDPARNGSLPTPSTRQEPSATRSVNINILAAGSAPVNQDSERQIPDSVVQFMRALIISSVVDSSQQETTAVTSDDAGTSRGAAHVLEAEAGVSDEGTFLSDLLRGIMPLISQQAGSEINVAPETEAEEDASGVQMGQDSSTQVATDTGTSRRQIHSDSEPSPPPSPKRQKMNDI 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00778 722 MobiDBLite consensus disorder prediction 520 569 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 172 200 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 517 569 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 175 200 - -
Bva05g00778 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Bva05g00778 722 MobiDBLite consensus disorder prediction 670 722 - -
Bva05g00778 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Bva05g00778 722 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bva05g00778 722 PRINTS Ubiquitin signature 53 73 IPR019956 -
Bva05g00778 722 PRINTS Ubiquitin signature 74 95 IPR019956 -
Bva05g00778 722 Gene3D - 15 113 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 100 119 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 258 279 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 430 471 - -
Bva05g00778 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Bva05g00778 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 719 - -
Bva05g00778 722 SUPERFAMILY Ubiquitin-like 17 103 IPR029071 -
Bva05g00778 722 CDD Ubl_ubiquitin_like 24 91 - -
Bva05g00778 722 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 719 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 681 706 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 93 119 - -
Bva05g00778 722 MobiDBLite consensus disorder prediction 430 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00778 Bva-Chr5 3919682 3927070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00778 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 5.13e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00778 K23390 - gmx:100783070 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00778 05 3919682 3927070 Bva05g00778 05 3919682 3927070 ECH