Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00752 ATGTCTTCTAACCACTTGAACGGTGACTCGGAGTCTCTCGCTCGCCCCCTGCTCTCTCAAAGAGCCATTGTCAACTCCACCTCCCAGGTTGCCATCGTCGGCGCCGATGTCTGCCCCATTGAGAGCCTCGACTATGAGATTTTCGAGAATGAGTTCTTCAAGCAGGACTGGAGGAGCCGAAGCAGGGTTCAGATATTCCAGTACATGTTTGTGAAGTGGCTCTTGTGCTTTCTGATTGGTTTGATTGTTGGCCTCGTCGGATTTTTCAATAATCTCGCCGTTGAAAATGTTGCTGGCATGAAGTTCGTGATTACATCGAATATGATGTTTGAGAGGAGGTTTTATTTGGCCTTTCTGGTGTTTTTTTCGTCGAATTTGGTTCTATCGCTTTTTGCTGCTACTATCACGGCTTTTATAGCACCTGCTGCTACGGGCTCTGGTATACCGGAAGTAAAAGCTTACCTCAATGGCGTAGATGCACCCGGAATATTTACAGTACGGACGCTGTTCGTTAAGATTATTGGAAGCATTTCGGCAGTGTCATCATCGCTTCTTATTGGAAAGGCGGGACCCTTGGTGCATACAGGTGCCTGTGTGGCATCAGTGCTGGGTCAGGGTGGGTCAAAGAGATATGGTTTAACATGGAAATGGTTACGATATTTTAAGAATGACCGAGATAGACGAGACCTAGTAACATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCTCCTGTTGGCGGGGTGTTGTTTGCTCTTGAAGAGATGGCATCCTGGTGGAGAAGTGACCTTTTGTGGAGAACTTTCTTTACAGCAGCAACAGTTGCAATTGTGCTTCGAGCTCTGATTGATTTTTGCTTAAGTGGTAAATGTGGCCTATTTGGTAAAGGGGGGCTGATAATGTATGATGTTTATTCAGAAAGTGTTTCATATCATATTAACGATGTGCCTCCTGTGCTTCTTCTCGGAGTTATAGGGGGAATACTTGGAGGCTTATATAACTTTCTGTTAAACAAGCTTCTCCGTGtatacaatattattaatgaGAAAGGCATTGGTTACAAAATTTTGGTTGCCTGTTTAATCTCTATTTTCACGTCTTGTCTTCTTTTTGGATTGCCATGGTTTGCATCTTGCCGACCTTGTCCACATGATGCTAGGGAGGCTTGTCCGACAATAGGCCGCTCTGGTAACTACAAGAAATTTCAGTGCCCTCCGGGTCACTACAACGATCTTGCCAGCCTCATTTTTAACACAAACGACGATGCTATCAGAAATCTATTTAGCAAGAACACTGACGATGAGTTTGAGTACTCATCAGTGCTCATCTTTTTTGTCACATGCTTTTTCctaagtatttttaattatgggaTTGTCGCTCCAGCTGGTCTTTTTGTACCAGTTATTGTGACTGGTGCATCTTATGGACGTCTTGTTGGGATGTTGGTTGACCAATACTCAAGTCTTAACAATGGCCTTTATGCTGTTCTGGGTGCTGTTTCCTTTCTTGGTGGATCAATGAGGAACACAGTTTCCTTATGTGTAATTATTCTAGAACTCACCAATAATTTGCTATTGCTACCCATGATAATGTTAGTGCTTTTGGTATCTAAGACTGTAGCAGACACTTTCAATGCCAACATATATGACCTACTTATGAAGGCAAAGGGGTTTCCATATTTAGTAAATTATGCTGAGCCGTATATGAGGCAGATAACAGTGGGGGATGTAGTCACAGGCCCGCTTCAGCTCTTCCATGGCATTGAGAAGGTCCGCAACATAGTTATTGTTCTCAAAACTACGGAGCACAATGCTTTCCCTGTAATTGATGAACCTCCATATTCTGAAGCTTCGGTTCTATTTGGTGTTATCCTTCGTGACCATCTTCTGAcattgttaaagaaaaaagctttCTTGTCCAGACCAATGGCAACAGATGATAGTGCCTTAAAGCAGTTCTCATCGGATGATTTTGCAAAAAGGGATTCAGGCAATAGTGACAAGATAGAGAATATACGGTTAACTGAGGAAGAGATGGACATGTTCATAGATTTGCATCCATTCTGCAATGCTTCACCATACACTGTTGTGGAGACAATGTCACTAGCAAAGGCCATGAGGCTTTTTCGAGAAGTTGGTTTAAGGCACCTCCTAGTGATACCGAAGATCTCTAGTAGATCACCTGTAGTTGGTATATTGACAAGACACGATTTCATGCCGGAACATATACTAGGTTTGAATCCTTTGCTGGTAAGAAGTAGGTGGAGAAGATTGCGATTCCAGATCCCTCGATTCTTCAAATCCTCTTA 2312 0.4256 MSSNHLNGDSESLARPLLSQRAIVNSTSQVAIVGADVCPIESLDYEIFENEFFKQDWRSRSRVQIFQYMFVKWLLCFLIGLIVGLVGFFNNLAVENVAGMKFVITSNMMFERRFYLAFLVFFSSNLVLSLFAATITAFIAPAATGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSISAVSSSLLIGKAGPLVHTGACVASVLGQGGSKRYGLTWKWLRYFKNDRDRRDLVTCGSAAGIAAAFRAPVGGVLFALEEMASWWRSDLLWRTFFTAATVAIVLRALIDFCLSGKCGLFGKGGLIMYDVYSESVSYHINDVPPVLLLGVIGGILGGLYNFLLNKLLRVYNIINEKGIGYKILVACLISIFTSCLLFGLPWFASCRPCPHDAREACPTIGRSGNYKKFQCPPGHYNDLASLIFNTNDDAIRNLFSKNTDDEFEYSSVLIFFVTCFFLSIFNYGIVAPAGLFVPVIVTGASYGRLVGMLVDQYSSLNNGLYAVLGAVSFLGGSMRNTVSLCVIILELTNNLLLLPMIMLVLLVSKTVADTFNANIYDLLMKAKGFPYLVNYAEPYMRQITVGDVVTGPLQLFHGIEKVRNIVIVLKTTEHNAFPVIDEPPYSEASVLFGVILRDHLLTLLKKKAFLSRPMATDDSALKQFSSDDFAKRDSGNSDKIENIRLTEEEMDMFIDLHPFCNASPYTVVETMSLAKAMRLFREVGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLNPLLVRSRWRRLRFQIPRFFKSS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00752 770 Pfam CBS domain 690 739 IPR000644 -
Bva05g00752 770 CDD CBS_pair_voltage-gated_CLC_euk_bac 574 742 - -
Bva05g00752 770 PRINTS Chloride channel signature 172 191 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 493 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 549 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 461 481 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 511 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PRINTS Chloride channel signature 141 158 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 PANTHER CHLORIDE CHANNEL PROTEIN 9 762 - -
Bva05g00752 770 Gene3D Clc chloride channel 64 563 - -
Bva05g00752 770 SUPERFAMILY CBS-domain pair 564 740 IPR046342 -
Bva05g00752 770 Gene3D - 564 740 IPR046342 -
Bva05g00752 770 PRINTS Plant CLC chloride channel signature 271 281 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g00752 770 PRINTS Plant CLC chloride channel signature 289 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g00752 770 PRINTS Plant CLC chloride channel signature 257 265 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g00752 770 PRINTS Plant CLC chloride channel signature 413 429 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g00752 770 PRINTS Plant CLC chloride channel signature 46 54 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g00752 770 SUPERFAMILY Clc chloride channel 50 562 IPR014743 -
Bva05g00752 770 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 762 - -
Bva05g00752 770 Pfam Voltage gated chloride channel 129 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g00752 770 ProSiteProfiles CBS domain profile. 686 750 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00752 Bva-Chr5 3784916 3788677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00752 10 766 Ion Channels AT5G33280 76.385 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00752 K05016 - twl:119997534 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00752 05 3784916 3788677 Bva05g00752 05 3784916 3788677 ECH