Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00703 ATGGTCCAATCGAAGAAATTCAGGGGCGTCAGGCAGCGCCACTGGGGCTCTTGGGTCTCTGAAATCCGCCACCCGCTTCTGAAGAGGAGGGTGTGGCTTGGCACATTTGAAACAGCAGAGGAAGCAGCTCGGGTTTATGATCAAGCTGCTATTTTGATGAATGGCAGAAATGCCAAAACCAATTTCCCAGTAACCCAAACTGCAGAAGGTGACCCCAATGCAGCAACTGAGAATTATCCATCACCTCCACACGATCTGAAGGAAATCCTTCACTCAAAGCTTAAAAAATGCAGCAAGGTACCCTCCCCTTCTGTGACCTGCTTGAGGCTTGACACTGAGAATTCTCATATAGGAGTGTGGCAAAAGCGTGCCGGTCAACGTTCTGATTCCAACTGGGTCATGAGGGTTCatctggaaaagaaaaatgcaaatgaTGCTGAAAATCATAGTCCTGATCTGCCTCCATCTGGTCATTCTCCAGCAGTGAAAGAGCAGGAACTGATAACAGCAGAGATGGATGAAGAACAGATAATTGCCCTGCAAATGATAGAAGAGCTTCTCAACAGGAACTGCCCGAGCCCTTCATTTAATAACATTGAAGAAAACGATACCAGCTTTTTACTTTA 626 0.4521 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARVYDQAAILMNGRNAKTNFPVTQTAEGDPNAATENYPSPPHDLKEILHSKLKKCSKVPSPSVTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVHLEKKNANDAENHSPDLPPSGHSPAVKEQELITAEMDEEQIIALQMIEELLNRNCPSPSFNNIEENDTSFLL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00703 208 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 198 - -
Bva05g00703 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bva05g00703 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 198 - -
Bva05g00703 208 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bva05g00703 208 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00703 Bva-Chr5 3470467 3471532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00703 1 190 AP2-EREBP Transcription Factor Family AT1G15360 56.931 1.01e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva05g00703 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00703 - - pvy:116140803 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00703 05 3470467 3471532 Bva06g00984 06 8234431 8235664 BWGD
Bva05g00703 05 3470467 3471532 Bva10g00372 10 4213994 4215260 ECH
Bva05g00703 05 3470467 3471532 Bva06g02398 06 15419717 15420844 ECH
Bva05g00703 05 3470467 3471532 Bva05g00703 05 3470467 3471532 ECH