Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00687 ATGGCATGGTCTAATGCAGATATCGACTTTACCCAGAAGCAGAATCGCTACGTCCCTCCACAGCACAGGAGCAATACCATTTCTGGTTTTAATAACGCAAACTCTTATGCCTTCTGTAATGAGTCAGCTCAGTCTGGTTTTTCTCCTTTCGCCCGTTTTGGTACTGGACGACATGGCTGGGCTGGTCCGAGTAGTGGCCACTTTAGCACTGCTGGTCGTGGCCGTGGTCGCCATCGCGGTCGAGGTGGTCGGTTCGGTTGCCAGGAAAGGGTCATTGGGTCGAGCCCCTGCCCGAACCGGGACGCTGTTGACGAGCTAGAGGTGATCGAGGAAGATTCAAACTTTGGGGGTATCAATTTTGATGCATACGAAGATATCCCAGTTGAGGCCAGTGGCTCTGACATATCCCCACCGGTAAATACCTTCGCAGAACTTGACTTGGACGAGGGTTTGAACAAGAATATCAGGCGATGCAAGTACGTAAAGCCCACTCCGATTCAACGTCATGCTATGCCCAATGCCGTTGCAGGCCGTGACTTGATGGCTTGCGCGCAGACCGGGTCAGGGAAGACTGCTGCGTTCTGTTTTCCCATTATATCTGGGATATTGAAGAGTCGTTTAAGCCTGCCGTCGGCGGCTTGTGGTGGCGGAATTGTATATCCTTCTGCGCTCATCCTGTCTCCGACTAGGGAGTTGTCATGTCAGATTCATGATGAAACGAAGAAGTTTGCATATCAGACTGGAGTGAAGGTTGCTGTTGCTTATGGTGGAGCACCGATTGTTAACCAGCTACGCAGTTTAGAAAGGGGTGTAGACATTTTAGTTGCAACTCCTGGGCGATTGGTGGATATAATCAAGAGAGAAAGGGTTTCACtgagaagaataaaatatttggcTCTGGATGAGGCTGACCGTATGTTAGACATGGGTTTTGAGCCTCAAATCAGGAAGATTGTTGAGCAAATGGACATGCCTCCGCCAGGTGTTAGACAAACTTTGCTTTTCAGTGCTACATTCCCAAATGATATACAGAAGCTTGCATCTGACTTTCTTTCAAACTACATATTCCTGGCCGCTGGAAGAGTTGGTTCAAGCAGTGAACTGATTATGCAGAAAGTCGAACTTGTTCAGGATATCGACAAAAGAAATCATCTTTTGGATCTTCTCCATTCTCAAAGAGCAAATGGGGCCCATGGAAAGCAAGCTTTGACTCTGGTGTTCGTTGCGACAAAAAAAGGAGCAGATGCTTTACAATTTTGGCTGTCGAATAAAGGTTTTCCAGCTATTGCAATACATGGTGACAAAGTTCAACTGGAGAGAGAACGAGCATTAAAGTCTTTTAAGACTGGTGCTACTCCAGTCTTGGTGGCAACTGATGTTGCTTCACGGGGCCTGGATATACCACATGTCTCCCATGTTATCAACTTTGACTTGCCAAAAGACATAGATGACTACGTTCACCGGATAGGCCGAACTGGTCGTGCTGGTAAGTCTGGTTTGGCCACTGCCTTCTTCAGTGATTACAACACCCCTCTGGCGAAGGCCCTTGTTGGACTGTTGCAAGAAGCAAACCAAGAAGTTCCCTCTTGGCTCAGCCAATACGCTGAGACCTTACCATCTGTTGGTGGTAGCAGAAGGAGCCAGCGATATAGTCGTGGCAAGTATGTTGGCCATGACTTCCGTTTTACCGAACCAGAGGTTGAGAAATACAAGGACTTCAGTACAGAGTCTTATTCTGATACCTGTTATGATATGGCAAACTCATACAATGATTCCTCATTGTCACATGATATCCCAGACACTAGCCTTGCTAGTAGTTATGATTATGCTGGTGCTACTGCTAATGCTgattatcaatatcaatatagaGCTGGGAATGCCGAAGATGGGTTAAACGGATATGCATCTGTTGTTGCCACAGGATGGGACTA 1931 0.4645 MAWSNADIDFTQKQNRYVPPQHRSNTISGFNNANSYAFCNESAQSGFSPFARFGTGRHGWAGPSSGHFSTAGRGRGRHRGRGGRFGCQERVIGSSPCPNRDAVDELEVIEEDSNFGGINFDAYEDIPVEASGSDISPPVNTFAELDLDEGLNKNIRRCKYVKPTPIQRHAMPNAVAGRDLMACAQTGSGKTAAFCFPIISGILKSRLSLPSAACGGGIVYPSALILSPTRELSCQIHDETKKFAYQTGVKVAVAYGGAPIVNQLRSLERGVDILVATPGRLVDIIKRERVSLRRIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTLLFSATFPNDIQKLASDFLSNYIFLAAGRVGSSSELIMQKVELVQDIDKRNHLLDLLHSQRANGAHGKQALTLVFVATKKGADALQFWLSNKGFPAIAIHGDKVQLERERALKSFKTGATPVLVATDVASRGLDIPHVSHVINFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSDYNTPLAKALVGLLQEANQEVPSWLSQYAETLPSVGGSRRSQRYSRGKYVGHDFRFTEPEVEKYKDFSTESYSDTCYDMANSYNDSSLSHDIPDTSLASSYDYAGATANADYQYQYRAGNAEDGLNGYASVVATGWD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00687 643 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 573 - -
Bva05g00687 643 CDD SF2_C_DEAD 369 505 - -
Bva05g00687 643 Gene3D - 360 537 IPR027417 -
Bva05g00687 643 CDD DEADc_DDX3_DDX4 141 363 IPR044763 GO:0003724|GO:0005524
Bva05g00687 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Bva05g00687 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 535 IPR001650 -
Bva05g00687 643 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 59 573 - -
Bva05g00687 643 Pfam DEAD/DEAH box helicase 164 346 IPR011545 GO:0003676|GO:0005524
Bva05g00687 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 511 IPR027417 -
Bva05g00687 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 357 IPR014001 -
Bva05g00687 643 Gene3D - 99 359 IPR027417 -
Bva05g00687 643 MobiDBLite consensus disorder prediction 64 84 - -
Bva05g00687 643 SMART ultradead3 159 372 IPR014001 -
Bva05g00687 643 Pfam Helicase conserved C-terminal domain 381 496 IPR001650 -
Bva05g00687 643 SMART helicmild6 415 496 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00687 Bva-Chr5 3410128 3413905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00687 122 504 Eukaryotic Initiation Factors Gene Family AT3G19760 32.552 4.78e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00687 K11594 - gmx:100791226 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00687 05 3410128 3413905 Bva05g00687 05 3410128 3413905 ECH