Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00678 ATGGACGAACATTTGCTGAAGCGGAACACCGATTGTGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGGGTTGATTGTGAGTACCGGCATAATGAGATGGCAAGGCTGAATCCAAGAGATTGCTGGTATTGGTTTTCTGGGAATTGCCTTAATCCAACATGTGGTTTTAGACACCCCCCATTGGAGGGGCATACAGGATCTTCTGAATTACCTGGGAAGAAGACACCGGCTCcctgttattttttcttcaatggaTTTTGCAACAAAGGTGACAGCTGCTCATTTTTGCATGGGCCTAATGATAGCATACCTTCTGTCAAGTCTGTCAAGAATTCCCCTGGAAGCACTGTCGCACTAATGCTAGAAGATAAGACATCATCAGGAAATAAAACAGATGCAGGATCAAcaccaactaaaaaaaatcctagtccatctgaaacttctccaaaggCTCctcttgattttaaatttcagcGTATGGAAGATCTTCAGCAACCAGTACCAGAAAATGTTAAACCGCAAAGTGCTTCCCAACAGATCTCTATTTATGAGTATAGAGAGCCTAATGTGAATAGGTCAGACTCCATCATTCCTGTAGACATCTCTGTTCATGGCGTTTCACATTTATGCATTGAGCAGAGTTTAGAGGAGCAAGTAAAGACTGAACACATAAAACCTGAGGAGCGATGGGAATCTTCTCCTGGATTTGATGTTCTTGTTGATGATGAGTCAGAGAACGGGGGTTATGAGGATAATTCTGAATATTTACCAGTGTTTGATAGGGAACAGAGGGAAGTGGCTGGGCAATACTTGGGCCCAGAAGCTGACATTCTGtatgaagaagaaatatatgatGGTTATAGATATTTAGATAACGAGCAGAATATTGCTATCGACAGAAGAGTTCCTTCTTATTATTCGAGAGAGATAGTAGTAGATTCTATATTGTCCAGGAAGAGGATTTACATGCCAGATGAAATGGCTGCTTGTGATAGGAACTTGGATCTACGGGACCATCTGAGGAGGCGCAGGGAATTTAGTGGTCTGCCAGTTAAAGGCTTCTTAAGTAGTCATGAATCATCTCGTCTGATGGTTCAAAGCGAGGAAAGGCATCTAAGGCGAGGCATTGATCGGCGGATAAGTAGAAGATTGACATCAGAAGTGGGATTGAACACTTTAGGCTCACTTGGAGAAGGCGAAACGCTTTCAATCGCCAACAAGCATGGTTTATTCAGGCATTCGCAGCAACGTAGGTCAAGGAAACAATACCGAGAAAAACCTGCTAAAAGGAAGTTTCTTTCATCTAACACTTCCAGGAAACCAGTGTCAAAGGAAAGGAGATCTATTCAGGAGTCCACCACGTTTACAGGTCCCAAGACTCTAGCACAGATTAAAGAAGACAAGAAGGCTGAAGAAAATGGGCATTTTAAAAGCACATCATCCGACTTCCAGGATCCCAAACCTCTGAGTGAAATCCTCAAGGAGAAAAGGAGTTTGGGTTGTGTCAGAATGGAAATACCTGCAACGACTGAATA 1541 0.4043 MDEHLLKRNTDCVYFLASPLTCKKGVDCEYRHNEMARLNPRDCWYWFSGNCLNPTCGFRHPPLEGHTGSSELPGKKTPAPCYFFFNGFCNKGDSCSFLHGPNDSIPSVKSVKNSPGSTVALMLEDKTSSGNKTDAGSTPTKKNPSPSETSPKAPLDFKFQRMEDLQQPVPENVKPQSASQQISIYEYREPNVNRSDSIIPVDISVHGVSHLCIEQSLEEQVKTEHIKPEERWESSPGFDVLVDDESENGGYEDNSEYLPVFDREQREVAGQYLGPEADILYEEEIYDGYRYLDNEQNIAIDRRVPSYYSREIVVDSILSRKRIYMPDEMAACDRNLDLRDHLRRRREFSGLPVKGFLSSHESSRLMVQSEERHLRRGIDRRISRRLTSEVGLNTLGSLGEGETLSIANKHGLFRHSQQRRSRKQYREKPAKRKFLSSNTSRKPVSKERRSIQESTTFTGPKTLAQIKEDKKAEENGHFKSTSSDFQDPKPLSEILKEKRSLGCVRMEIPATTE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00678 513 MobiDBLite consensus disorder prediction 410 490 - -
Bva05g00678 513 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 101 IPR000571 GO:0046872
Bva05g00678 513 MobiDBLite consensus disorder prediction 127 150 - -
Bva05g00678 513 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Bva05g00678 513 SUPERFAMILY CCCH zinc finger 76 100 IPR036855 GO:0046872
Bva05g00678 513 MobiDBLite consensus disorder prediction 413 429 - -
Bva05g00678 513 MobiDBLite consensus disorder prediction 127 153 - -
Bva05g00678 513 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 499 - -
Bva05g00678 513 Pfam Zinc-finger containing family 7 63 IPR041686 -
Bva05g00678 513 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 499 - -
Bva05g00678 513 ProSiteProfiles Zinc finger C3H1-type profile. 75 102 IPR000571 GO:0046872
Bva05g00678 513 MobiDBLite consensus disorder prediction 464 480 - -
Bva05g00678 513 Gene3D - 2 64 - -
Bva05g00678 513 Gene3D - 67 135 - -
Bva05g00678 513 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Bva05g00678 513 SMART c3hfinal6 76 101 IPR000571 GO:0046872
Bva05g00678 513 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Bva05g00678 513 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00678 Bva-Chr5 3379281 3382178 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g00678 zf-CCCH_3 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00678 - - aprc:113847503 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00678 05 3379281 3382178 Bva05g00678 05 3379281 3382178 ECH