Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00675 ATGTCAGAAAACTTTGCTATGAATTTTCCTGATCATCCTCCATCCTTTATGCCGTCGCCGTCGCCGGCGCCTTTTGCTGCAGATACCGATGCCATAGGTGCCTGGTCTcaattccaaatttccaaCGAACAATTCGACCCACATTCGCAATATGAACAGGCTCCCTCATTCAAGAGGGCCAGGACTTCTGAGACCATCCCCATTAATTCCAGGATGCACCCACCAAATCCAATCAATAAAGGCACAAGCCATATCTTCTTCAAGACCCGCATGTgtgcaaaattcaaaatgggTATGTGTAGGAACGGTGAAAATTGCAACTTTGCACATGGCATTCAAGATGTGAGACAGCCACCCCCAAATTGGCAGGAGCTTATTGGCATGCGTGACGAAGTTCGGTCGTCGGGTAATTGGGATGatgaccaaaaaataattcataagatGAAGTTATGCAAGAAGTATTACAACGGGGAGGAATGCCCTTATGGCGATAGGTGTAATTTTCTTCATGAAGACCCAGCTAAGTTCAGAGATGATTCTGGGAGGTACAGAGAAAGTTCAGCAATAAGCATTGGAACCAATGAATCGCCAAAGTCGCAAGGCAATGGTTCTATTAATTCTGACAGTAATAGGCTTATGAACGCAGGCTTAGATGTTCAATCAAATGTGAAGTCTGCGTTTTGGAAGACCAAGTTGTGTATCAAGTGGGAGACAACAGGTCAATGTGGATTCGGCGATAAGTGTCACTTTGCTCATGGTCAACAAGAGTTACAAGTGCCTGTTGGACGCATTGAAACAGAAGCTACAAGCTCCATTTTAGTTGCATCGAAATCTACATCAGTTCCTGCCAATGATGCAATTCCTTGCAATACAGCAGCAATTCCAAGTGTTTCAAATGAAGAGGAGCAGGGTAAGAAGTCTTTACTAAAGTGGAAAGGGCCTAAGAAGATTAATCGAATTTATGCTGATTGGCTTGATGATGTGCCTCTTGTACACAACTTGCCAAGGAAAGTGGAGACTTA 1022 0.4198 MSENFAMNFPDHPPSFMPSPSPAPFAADTDAIGAWSQFQISNEQFDPHSQYEQAPSFKRARTSETIPINSRMHPPNPINKGTSHIFFKTRMCAKFKMGMCRNGENCNFAHGIQDVRQPPPNWQELIGMRDEVRSSGNWDDDQKIIHKMKLCKKYYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTNESPKSQGNGSINSDSNRLMNAGLDVQSNVKSAFWKTKLCIKWETTGQCGFGDKCHFAHGQQELQVPVGRIETEATSSILVASKSTSVPANDAIPCNTAAIPSVSNEEEQGKKSLLKWKGPKKINRIYADWLDDVPLVHNLPRKVET 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00675 340 Gene3D - 142 174 - -
Bva05g00675 340 Gene3D - 220 259 - -
Bva05g00675 340 Gene3D - 80 117 - -
Bva05g00675 340 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Bva05g00675 340 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Bva05g00675 340 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Bva05g00675 340 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Bva05g00675 340 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Bva05g00675 340 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Bva05g00675 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 7 329 IPR045877 GO:0003729
Bva05g00675 340 MobiDBLite consensus disorder prediction 186 209 - -
Bva05g00675 340 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Bva05g00675 340 MobiDBLite consensus disorder prediction 178 209 - -
Bva05g00675 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Bva05g00675 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 254 IPR000571 GO:0046872
Bva05g00675 340 SUPERFAMILY CCCH zinc finger 226 258 IPR036855 GO:0046872
Bva05g00675 340 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Bva05g00675 340 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Bva05g00675 340 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 7 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00675 Bva-Chr5 3367664 3370008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00675 226 275 C3H Transcription Factor Family AT1G68200 42.308 5.28e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g00675 zf-CCCH 2.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00675 - - aprc:113846184 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00675 05 3367664 3370008 Bva05g00675 05 3367664 3370008 ECH