Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00656 ATGAAAGGGGACGTGCAGCTAGAGCCTCCAGTTATACAACAAAACCCTCGTGATTCTGACCCTTTACTCGATGACCAGGAGGGGTCGTCCCGGGGAAGCTCCAGTGAGATTCAGGGCGATGACATCGAGGCCGGCTCAGTTCCTTGCTGTAGAATCTGTCTGGAAAGCGATTCCGAGCCAgGTGACGAATTGATTTCTCCATGCATGTGCAAAGGGACCCAACAATTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTTAAGGAAGGATTTGCTTTTTCACATTGCACAACTTGCAAAGCCCAATTTCACCTTCGAGTTGAATCGTATGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCTAGGGATGTTTTCCTTGTCTTTTTAGCTGTACAAACTgTGATCGCTGCAATAGGTGGCTTTGCTTACATCATGGACAAAGATGGGGCATTCAGGAACTCCTTCAGTGATGGTTGGGATCGGATACTGTCCAAACATCCAATaccattttattattgtattgGAGTAATGGCCTTCTTTGTGCTGCTTGGATTTTTTGGTCTCATAGTACATTGCTCCTCCGTTAATACCAATGACCCCAGATTGGCTGGTTGCCAGAATTGTTGTTATGGGTGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCTTTGTGGTTGTTTTCGTGGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTCCTTGCGGCCACCATGGCTATTCAAAGAATTTGGCAGAGGCACTACCACATCCTCACCAAGAGGGAGCTCACAAAGGAATATATAGTGGAGGATCTCCATGGTCGTTATTCCCCGCCAAAGTTGGACGCAGAACACATAGAACGCCTGAAAATGCTTAAGCTTTTGTG 917 0.4526 MKGDVQLEPPVIQQNPRDSDPLLDDQEGSSRGSSSEIQGDDIEAGSVPCCRICLESDSEPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVLLGFFGLIVHCSSVNTNDPRLAGCQNCCYGWGILDCFPASMEACFAFVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGRYSPPKLDAEHIERLKMLKLL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00656 305 Pfam RING-variant domain 50 100 IPR011016 GO:0008270
Bva05g00656 305 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 305 - -
Bva05g00656 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 114 IPR013083 -
Bva05g00656 305 MobiDBLite consensus disorder prediction 1 41 - -
Bva05g00656 305 CDD RING_CH-C4HC3_MARCH 50 101 - -
Bva05g00656 305 SMART ringv_2 49 101 IPR011016 GO:0008270
Bva05g00656 305 ProSiteProfiles Zinc finger RING-CH-type profile. 42 107 IPR011016 GO:0008270
Bva05g00656 305 MobiDBLite consensus disorder prediction 26 40 - -
Bva05g00656 305 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 305 - -
Bva05g00656 305 SUPERFAMILY RING/U-box 47 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00656 Bva-Chr5 3268206 3271391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00656 1 305 C3H Transcription Factor Family AT1G11020 78.505 1.25e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00656 - - pmum:103341012 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00656 05 3268206 3271391 Bva05g00656 05 3268206 3271391 ECH