Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00648 atgGCATCTTCCTCCGAACTAAGCCTGGATTACAAACCCCATAGCTATTCCATGCTGCTCAAATCTTTTGGAGATCAGCAGAGTGAACAGACCTACAAGCTTGAAGAATACCTTTCTCTCCTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTTACCAACGCTATGGAGGGTTTAAGGCAGCAACTACAGGCTTTTAGAGGAAATCAAGGCACGAGGCCAGTTCTTGAGGAATTCATGCCTATAAAGCATTCAACCTCTGAAAGCTCTGAAAAGGCACCAAACATGTCGGACAAGGCAAATTGGATGACTTCCGCTCAACTATGGAGCCAAGCAAGTGAAGGAAGCAATCCACAATCCACAATTACATCACCCAAAGAATCTGATATTGGCTTCAACGTTAGCCCTAAGCTAGCCGTAGACAACAAACAGAGGAATGGAGGAGCcttccttccattttcaaaagaaagaaactcgTGCCCTGGCTCCGCATTGCGGGCTCTCCCTGAGCTTGCTCTTGCTTCTActgagaaagaaatagaggacAAAAAATGTGCAGAGCCTGAAAATGGAGCATCAGGTCCAAAGAGGGAGAATTCTGGCAAAGGAGGCAATGGTGGGGTGGTGATTGATCAAGGAAAAAGATCTACAGCTGCAGCTGAGCCACAAACAAGCAATACCACCAATAACACAAGTTCTACACAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCAGACTTGCACCGCAGATTTGTGAACGCTCTTCAAATGCTTGGTGGATCTCAAGCAGTGGCCACACCAAAACAAATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTTCAGAAATATAGGCTTCACACTAGACGACCCAGTCCGAGCCCACAAGCAGGCGGAGCACCCGCCCCGCAGCTCGTAGTTCTAGGAGGGATCTGGGTCCCACCGGAGTATGCCACGGCGGCAGCAGCCGCCCCTGCCCTCTATGGCCCACACCCAACCTCCCATGCGCCACCACCTCACTATTGCACTGCCACCCCTGTGTCCCAAGACTTTTACACTGCTACCCCGGCGCAGCCCCCGCTGCCACCACAACCACACCACCACGGGCTCCATCACCACTTCCACATGTACAAAACGGCGCCACACACCCACACCTCGCCCGAATCTGAGATACGTGGAGCCGGCGACCTATCGGAAAGCATCGAGGACGGCAAGTCCGAAAGCAGCAGTTGGAAGGGGGAGAGTGCCGAGAAcgaaggggaaagaaaaggattggcCGCGCTTAGAGATCAAGATGGAGAGGACAGCAACGGGAGTGACATCACTCTCAAATTCTA 1391 0.4867 MASSSELSLDYKPHSYSMLLKSFGDQQSEQTYKLEEYLSLLEEERLKIDAFKRELPLCMQLLTNAMEGLRQQLQAFRGNQGTRPVLEEFMPIKHSTSESSEKAPNMSDKANWMTSAQLWSQASEGSNPQSTITSPKESDIGFNVSPKLAVDNKQRNGGAFLPFSKERNSCPGSALRALPELALASTEKEIEDKKCAEPENGASGPKRENSGKGGNGGVVIDQGKRSTAAAEPQTSNTTNNTSSTQTHRKARRCWSPDLHRRFVNALQMLGGSQAVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAGGAPAPQLVVLGGIWVPPEYATAAAAAPALYGPHPTSHAPPPHYCTATPVSQDFYTATPAQPPLPPQPHHHGLHHHFHMYKTAPHTHTSPESEIRGAGDLSESIEDGKSESSSWKGESAENEGERKGLAALRDQDGEDSNGSDITLKF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00648 463 MobiDBLite consensus disorder prediction 227 249 - -
Bva05g00648 463 MobiDBLite consensus disorder prediction 398 463 - -
Bva05g00648 463 Pfam Myb-like DNA-binding domain 251 303 IPR001005 -
Bva05g00648 463 MobiDBLite consensus disorder prediction 120 139 - -
Bva05g00648 463 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 305 IPR006447 GO:0003677
Bva05g00648 463 Gene3D - 248 307 - -
Bva05g00648 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 307 IPR017930 -
Bva05g00648 463 Coils Coil 59 79 - -
Bva05g00648 463 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 463 - -
Bva05g00648 463 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 463 IPR044787 GO:0003700|GO:0006355
Bva05g00648 463 SUPERFAMILY Homeodomain-like 246 308 IPR009057 -
Bva05g00648 463 Coils Coil 34 54 - -
Bva05g00648 463 MobiDBLite consensus disorder prediction 413 457 - -
Bva05g00648 463 MobiDBLite consensus disorder prediction 188 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00648 Bva-Chr5 3236538 3239169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00648 1 463 G2-like Transcription Factor Family AT2G03500 50.617 3.52e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bva05g00648 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00648 - - qsu:112031181 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00648 05 3236538 3239169 Bva06g01048 06 8538960 8541981 BWGD
Bva05g00648 05 3236538 3239169 Bva05g00648 05 3236538 3239169 ECH