Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00629 ATGATGAGCTGGCGAAGAGTATTGAAGTCTGTACAGGCCTTTGCTGCGCATacccttctcttctctttcactcTTTTGCTCGTTCTCAAGCTCGATCACACACTCTCTTGCTCTTGGTGgataatattttttcctctATGGATGTTCCATGCTGTTGTAGCTCGAGGAAGGTTCTCATTACCTGCACCATCAGTTCCGCGTAACCGACACTGGGCACCATGCCATGCAGTTGTTGCAATACCGTTGCTTATTGCATTTGAACTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCATGGTATTGCAGCTGTAAACCTGAAGATTGTGTTCCTTCCCTTGCTGACATTTGAAGtcattattttgattgacAATTTCAGGATGTGTAGGGCTCTGATGCCAGGGGATGGAGAAAACATGAGTGATGAAGCAATATGGGAAACTCTTCCTcATTTCTGGGTTGCAATCTCGATGGTCTTCTTTGTTGCTGCATCAGTCTTCACCCTCTTAAAACTATGTGGTGATGTGGGTGCTCTTGGCTGGTGGGAGTTATTCATTAACTTTGGTATTGCTGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGTCATTCATAGAAATTCTCGCTCAAGAGAAGCCAGCATACCTTCTAATACAATAAGATATCTTGACTGGAATAGTGGCTTAGTAGTTTCTTCAGAGGAAAATCAACGTCAAGAGAGACTGTGTGGCCTGCAAGACATTGGAGGCCATTTCATGAAAGTTCCAGTTATTGGATTCCAAATTCTTCTTTGTATGCGTTTAGAGgGAACACTGTCTGGTGCTAGATATATACCAGTTCCAGTTCTTTTCTCTCcacttttccttcttcaagGTGTTGGTGTACTCTTTGCTGCATCTAAGTTAGTGGAGAAACTTCTACTTCTGCTACGTAGTGGATCTGATGGAggaatatattttagatttgcATCAAGAGCTCACGATTGCTTCGGGTTCATGCACCATGGTTCAAGGTTATTGGGTTGGTGGTCAATCGATGAAGGGAGTCGAGAAGAACAGGCACGGTTATTCCAAGAGGGAGCATCCGGGTATAACACATTCTCTGGTTATCCACCCGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAAGAGGTCTGGAGGCTTCAGGCAGCTCTTGGTGAGCAGACggaaattacaaaatacaGCCAACAGGAGTTCGAGAGACTTCAAAATGAGAAAGTTCTGTGCAGAATTTGTTTCGAGAGGGAGATTAGTGTTGTTCTGCTCCCGTGTAGGCATCGTGTCCTTTGCTGTTCTTGCTCAGAGAAATGCAAGAAGTGCCCAATCTGCCGTGTTTCTATTGAGGAGCGCTTACCTGTATATGACGTTTA 1406 0.4083 MMSWRRVLKSVQAFAAHTLLFSFTLLLVLKLDHTLSCSWWIIFFPLWMFHAVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLIAFELLLCIYLESLYVHGIAAVNLKIVFLPLLTFEVIILIDNFRMCRALMPGDGENMSDEAIWETLPHFWVAISMVFFVAASVFTLLKLCGDVGALGWWELFINFGIAECFAFLVCTKWSNPVIHRNSRSREASIPSNTIRYLDWNSGLVVSSEENQRQERLCGLQDIGGHFMKVPVIGFQILLCMRLEGTLSGARYIPVPVLFSPLFLLQGVGVLFAASKLVEKLLLLLRSGSDGGIYFRFASRAHDCFGFMHHGSRLLGWWSIDEGSREEQARLFQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEREISVVLLPCRHRVLCCSCSEKCKKCPICRVSIEERLPVYDV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00629 468 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 468 - -
Bva05g00629 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Bva05g00629 468 ProSiteProfiles Zinc finger RING-type profile. 421 456 IPR001841 -
Bva05g00629 468 SUPERFAMILY RING/U-box 412 463 - -
Bva05g00629 468 Pfam Zinc finger, C3HC4 type (RING finger) 418 461 - -
Bva05g00629 468 Pfam Transmembrane Fragile-X-F protein 29 293 IPR019396 -
Bva05g00629 468 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00629 Bva-Chr5 3125472 3132892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00629 2 468 C3H Transcription Factor Family AT1G73950 73.233 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00629 - - rcu:8286742 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01069 06 8650274 8657360 Bva05g00629 05 3125472 3132892 ECH
Bva05g00629 05 3125472 3132892 Bva05g00629 05 3125472 3132892 ECH