Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00628 ATGTTTCCCTCAAACAGTTCCCTCAACGGTAATGACCCAGTTGCATACTGTGACCAAGCATTTAGCTGCAGGCCTGTTTTCTGTGACAGCAACCCAAATCCCAAACGAGACAATGCTTTTGCCCCTACTTCTCTTCGTCTTCCTACTTTATCCTTTCTCCACTTCCCTTCTCCCTTTGAAGACGATGAATTTTTTCTACAACAACATCATCATGATCTCTTGGTTCACCACCAATCTCTATCCGAGGCTGTTAATGTCGGCGTGGAGGTTACAACCAAGATTCCTAATAAGGGACACCGCATGAGTATGGAGCAGATCCCAAGAAGAAAACCTTGCAAGAGAGATCGACACAGCAAGATTAAAACAGCTCGGGGACTAAGGGATCGGAGAATGAGGCTGTCCCTTGAAGTtgctagaaatttttttggtctGCAAGACATGTTAGGCTTTGACAAAGCGAGCAAAACGGTGGAGTGGTTACTTAATCAAGCAAAGGACGATATCAAACACCTAGCGACAGATCAGAACAACCACCTTAGTACTGCTGGAGTGAAGAGTGCATCTTCAACTTCAGAATGTGAAGGGGTTTCAGGCTTAGATGAGGTTGCAGTCAGTGGAAATCGAGAACAAGATGGGAAACCCTCAGCGAAGAAAAGGATTAAACATTCTCGAAAGAATGCATTCCATCCCATTGCTAGGGAGTCAAGGGAAAAAGCAAGAGAAAGGGCAAGAGAaaggacaaaggaaaagatgaGAAGTCGCAGACTAGCTGATGAATCAAAGACTGAGCAATGCAGCGatgaaaaaaacaattgtCTTAGCCGATTGGGTTCTTGGAATCCCTTTGAAACAAGAGAGGAATCTCATACCCAGAGTCGAAACGTGAATCTCTCCTTGGATGTGATGACTGAGGCCGAGGATCCGAGTTCTCAGGCAAAGGAGCATTTGGGGACTATAGATGACATGGTCCATGATGATTCTTTGTTGATTATGAGCAAATGGAGCCCATCCATGATTTTCAATTCACTGGCTAACTCTGGATTCATGCAACATCAGTTTGCGGAATTTCAGTCCTTGGGCAAACCTTGGGAGGCCTACAACAATAACATCTA 1112 0.4299 MFPSNSSLNGNDPVAYCDQAFSCRPVFCDSNPNPKRDNAFAPTSLRLPTLSFLHFPSPFEDDEFFLQQHHHDLLVHHQSLSEAVNVGVEVTTKIPNKGHRMSMEQIPRRKPCKRDRHSKIKTARGLRDRRMRLSLEVARNFFGLQDMLGFDKASKTVEWLLNQAKDDIKHLATDQNNHLSTAGVKSASSTSECEGVSGLDEVAVSGNREQDGKPSAKKRIKHSRKNAFHPIARESREKARERARERTKEKMRSRRLADESKTEQCSDEKNNCLSRLGSWNPFETREESHTQSRNVNLSLDVMTEAEDPSSQAKEHLGTIDDMVHDDSLLIMSKWSPSMIFNSLANSGFMQHQFAEFQSLGKPWEAYNNNI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00628 370 ProSiteProfiles R domain profile. 233 250 IPR017888 -
Bva05g00628 370 MobiDBLite consensus disorder prediction 181 266 - -
Bva05g00628 370 PANTHER TRANSCRIPTION FACTOR TCP18 36 342 - -
Bva05g00628 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 36 342 IPR005333 GO:0003700
Bva05g00628 370 MobiDBLite consensus disorder prediction 227 266 - -
Bva05g00628 370 MobiDBLite consensus disorder prediction 181 195 - -
Bva05g00628 370 Pfam TCP family transcription factor 113 253 IPR017887 -
Bva05g00628 370 ProSiteProfiles TCP domain profile. 113 171 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00628 Bva-Chr5 3114036 3115334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00628 76 247 TCP Transcription Factor Family AT3G18550 39.604 3.57e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva05g00628 TCP 6.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00628 - - gmx:100803669 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01071 06 8674253 8675540 Bva05g00628 05 3114036 3115334 ECH
Bva03g01855 03 16783751 16785466 Bva05g00628 05 3114036 3115334 ECH
Bva04g00479 04 2873978 2876253 Bva05g00628 05 3114036 3115334 ECH
Bva05g00628 05 3114036 3115334 Bva05g00628 05 3114036 3115334 ECH