Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00616 ATGATCGAACCAGAGGACAATCACCACATTTCGCCTGAGGACGAAACTGAGAAGAAGAAgcgcaaaagaaaaaaagcacgTAAAACTGCAACTGCGGAGCAATCTGAGCCTCAAGAGGCTGACGAGCATGCAGGGGAAGAAGATGGTCAAACAGAAGGGAATGGACACGGGGAAGGAGAATCTATGCAGGAAATTAAAAaggataagaagaagaagcataaGAAGATGAAGAGTGGGGAAGGAGAAGTTGAAGGGGGAAAGGGCGGTGATGTTAGTGATGAGGAccaagaggaggaagaagaacagAGAAAGGTGAAGAAGGTGGAGTCTGGAATTATGAGCTCTGTGTTATTTGCTTCGGAAGATCTCAAATTGTCCGAGCCTACTTTGAAGGCTATTAAGGAGATGGTATTCCAGCATTTGACTCagATTCAAGCGAGAGCGATTCCATCGCTTCTAATGGGAAAAGATGTTCTTGGTGCTGCAAGGACGGGTTCTGGAAAAACGCTGGCTTTTTTAGTACCAGCTGTTGAGCTGTTATACCACACTCAGTTTACTCCTCGCAGTGGAGCGGGTGTCATCGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCCGTTGCAAAAGATCTGCTCAAGTATCACTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAGAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTATTAGTAGCAACTCCTGGTCGTCTTCTTGATCATCTCCAGAATACTAAGggttttatctataaaaactTAAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAACAGAGTATTAAGATCCTACCAAAGAACAGGCAAACAGCGTTGTTTTCGGCTACACAAACAAAGAAGGTCGAGGATCTTGCCTGCTTGTCATTTCAGACAAAACCTGTATATATTGGTGTGGATGATGACAGAACCAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCCAAACTTCTCAATAACATACAGGTGAAATGCTTTGACATTCACGGAAAACAAAAGCAGCAGAGACCGACAAATACTTTCTTTGAATTCTGCAAAGCAGAAAAAGGAATCCTGCTCTGTACTGATGTTGCTGCTCGTGGACTCGATATACCTGCTgtgGACTGGATTGTGCAGTACGATCCTCCTGATGACCCCAAGGAATATATACATAGGGTTGGTCGGACAGCTCGTGGAGAGGTTGGAAATGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGTCAGCAAAGGTTCCTGTGAAAGAATATGCGTATGAAGACAAAAAGCTGGCGAATGTTCAGTCTCAGCTGGAGAAGTTGGTCGGtaacaattataatttgaacCAGTCGGCGAAAGAAGCTTACAGATCATATATATTAGCTTATAATTCACACTCTATGAAGGATATATTCAACGTGCACCACCTTGATTTACTGGCTGTTGCTGCTTCATTCTGTTTTTCGAACCCACCAAAGGTGAATCTGAACATAAACAACACTGCTTCAAAGATTAGGAAGAAGATGCGTAAAATTGATGGAAAGAGACATGGATTGAGCTTGAGCAATCCATATGGAAAGCAAAACGAGGATGATAAGGGGCAATTGGTGAGGCATTA 1715 0.407 MIEPEDNHHISPEDETEKKKRKRKKARKTATAEQSEPQEADEHAGEEDGQTEGNGHGEGESMQEIKKDKKKKHKKMKSGEGEVEGGKGGDVSDEDQEEEEEQRKVKKVESGIMSSVLFASEDLKLSEPTLKAIKEMVFQHLTQIQARAIPSLLMGKDVLGAARTGSGKTLAFLVPAVELLYHTQFTPRSGAGVIVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQSIKILPKNRQTALFSATQTKKVEDLACLSFQTKPVYIGVDDDRTKVTNEGLQQGYVVVPKLLNNIQVKCFDIHGKQKQQRPTNTFFEFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEVGNGNALLFLIPEELQFLRYLKSAKVPVKEYAYEDKKLANVQSQLEKLVGNNYNLNQSAKEAYRSYILAYNSHSMKDIFNVHHLDLLAVAASFCFSNPPKVNLNINNTASKIRKKMRKIDGKRHGLSLSNPYGKQNEDDKGQLVRH 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00616 571 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g00616 571 MobiDBLite consensus disorder prediction 47 67 - -
Bva05g00616 571 MobiDBLite consensus disorder prediction 1 107 - -
Bva05g00616 571 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Bva05g00616 571 SMART DUF4217_3 465 528 IPR025313 -
Bva05g00616 571 CDD SF2_C_DEAD 348 435 - -
Bva05g00616 571 PANTHER RNA HELICASE 353 562 - -
Bva05g00616 571 PANTHER RNA HELICASE 56 348 - -
Bva05g00616 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 353 562 - -
Bva05g00616 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 56 348 - -
Bva05g00616 571 MobiDBLite consensus disorder prediction 548 571 - -
Bva05g00616 571 Pfam Helicase conserved C-terminal domain 348 424 IPR001650 -
Bva05g00616 571 Gene3D - 334 462 IPR027417 -
Bva05g00616 571 SMART helicmild6 344 425 IPR001650 -
Bva05g00616 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 324 IPR014001 -
Bva05g00616 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 464 IPR027417 -
Bva05g00616 571 Pfam DEAD/DEAH box helicase 142 313 IPR011545 GO:0003676|GO:0005524
Bva05g00616 571 SMART ultradead3 137 342 IPR014001 -
Bva05g00616 571 CDD DEADc_DDX18 129 326 IPR044773 GO:0003724|GO:0005524
Bva05g00616 571 MobiDBLite consensus disorder prediction 75 90 - -
Bva05g00616 571 Gene3D - 58 327 IPR027417 -
Bva05g00616 571 Pfam Domain of unknown function (DUF4217) 466 526 IPR025313 -
Bva05g00616 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Bva05g00616 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 325 IPR027417 -
Bva05g00616 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 474 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00616 Bva-Chr5 3049636 3053964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00616 122 444 Eukaryotic Initiation Factors Gene Family AT3G19760 27.298 2.06e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00616 K13179 - sind:105164333 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00616 05 3049636 3053964 Bva05g00616 05 3049636 3053964 ECH