Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00610 ATGGAAAACCTAGAGACCTCAGAATCCCCATTCCAATCTCAAAACTCATGCAAAAATCACTCTTTAATGTCTTTAGAAGCTGAGAACAAAGATAGGAGGACTATGAAGTtcgaaaaaagagaaaatagtaATGGGAGAAAGTTCCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTTGCTGAGATCAAGGACTCCTCACAGAAGCTGAGGCTGTGGTTAGGAACTTTTGACAGAGCTGAAGAAGCTGCTCTTGCATATGACTGTGCTGCAAGGCTTCTAAGAGGTAGAAATGccaaaacaaattttccaaGCAGTGGAGTTGGCAAACCCCATGAAGAAAGTTGCAGCTTTTTGGGAAAGAATCCTAGAGCTTATCAGCTTCTCAAGCGTGCAGTCATGAAGAACCATGCACTATCTGCATCTATTTATTCCACAACCATGCCATGGAAAAACCAGATTATGAGCGATGAATTTGACACGCTCGTTGAAGATACTATAGTTTGTTCTTCTAGCTCTGAGGAAGGGTCAGGGTGCAGTGGTCTTTCATTTGGTAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTTCTTCCCTGTCTCAAACAGGAGGTGATCATGGAGGATCccctta 644 0.4068 MENLETSESPFQSQNSCKNHSLMSLEAENKDRRTMKFEKRENSNGRKFLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEEAALAYDCAARLLRGRNAKTNFPSSGVGKPHEESCSFLGKNPRAYQLLKRAVMKNHALSASIYSTTMPWKNQIMSDEFDTLVEDTIVCSSSSEEGSGCSGLSFGSSKVYSSVVVAPSFSSSLSQTGGDHGGSP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00610 214 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Bva05g00610 214 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Bva05g00610 214 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Bva05g00610 214 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Bva05g00610 214 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Bva05g00610 214 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Bva05g00610 214 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Bva05g00610 214 MobiDBLite consensus disorder prediction 1 22 - -
Bva05g00610 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 208 - -
Bva05g00610 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Bva05g00610 214 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00610 Bva-Chr5 3020193 3020837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00610 28 103 AP2-EREBP Transcription Factor Family AT5G19790 60.526 2.22e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva05g00610 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00610 K09286 - gmx:100807374 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00610 05 3020193 3020837 Bva05g00610 05 3020193 3020837 ECH