Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00594 ATGGCAGATGTCACCTACCTTCGCCTTCACGAACCCGATGACGATCCTCATCTTCCTGAGCAAACCCTAACTCTGGATTCTATCCCTTACTGGTCTCATCACGATTTCGATTTGTATGCTTCTGATCCCGATTTCCCTCTATCTGATGCTTCTCTCCTTCCCCATATGGCCTCATGGGATGCTGCCTTGTCAGAACAATTTGAATCAACAATCTGTGTTCGAGGTGAGGATGACTTCTCGGACGCTGGTTCGATTTCAAACGCCGCCGATCTTTTAGACCCTGAAAACCAGGTAAATTTCGTTATGGATCTCTTCCAACAACGTGTTGAACAATCGCAGGTCATGGGCCATAGAGATTTTGTTTCGGATAATGAATCGGGTTTTGGTGTTATTGACGGACACTGTGATGTGGGTGTTGATGTTTTGGGGCTGGATTCGGGGTTAGGTTTAAGATTTGGTGTCGGGAGGGATTGTGATGACAATTGTCGTTTCACGGTTGAAAGATATGGTTCCATTGGAGGTGCTGGCGATGATGATGATATCTTCATTGGGAGGAGGGTTTCTGGATCTGAACCCAGCGAGGCACCGTCGGCAAGCGGGATGCAAAATTTGGAGAACTGTGTCCGGCTTGTGGGGTTTGGATTGGATTCGGATGAGGAGGATAACGGGGTTTTGGATCCCTATTTTCATTCGGAAGATGAGTGTAATTTGTACACTGAGAACGATGATGCTGCGAGCATCCCTCTTTGTTGGGATTCGATTCAGTTGGAGGATAACAGGGAGGGTAATGAAGATTTTGAGTGGGAGGAGGTGGATGGACGAGTTGATGAGAGGGAATTTTTGAGCATGTTCACGGCTGAAGATGATAGGTCTGTTTCGGCATCGGTGTCGCCGCTAATTGGGCTTGGAGAAGAAGTAGGTGTTGTGAGGGTTGGTGGCATGGAGAATTTGGAGTGGGAAGTGCTGTTGAATGCCAATAATTTGGACACAAACCCTGATTTGGACCGTGATGCAGAGCCTTATTTTGGTGATCATgatgattatatatacactGCAGAGTACGAAATGATGTTTGGGCAATTTACAGAGAATGAGAATCCCTTAATGGGTCGGCCTCCAGCCTCTCTGTCCGTTGTTCAACATCTTCCATCGGTTGTTTTGACCAAGGAGGATGTAGAGAACAATAATGCACTTTGTGCAGTTTGTAAGGATGAGTTCAATGTTGGGGAACAAGCAAAAGAGTTGCCATGTTCACATCGTTACCATGGTGACTGCATTATACCTTGGCTGGGCATCAGGAACACTTGCCCTGTCTGTCGTTACGAGTTACCAACAGATGATGCTGATTATGAGCGTAGGAGGAGCCAAAGATCTGGCCGCAGCTA 1385 0.4643 MADVTYLRLHEPDDDPHLPEQTLTLDSIPYWSHHDFDLYASDPDFPLSDASLLPHMASWDAALSEQFESTICVRGEDDFSDAGSISNAADLLDPENQVNFVMDLFQQRVEQSQVMGHRDFVSDNESGFGVIDGHCDVGVDVLGLDSGLGLRFGVGRDCDDNCRFTVERYGSIGGAGDDDDIFIGRRVSGSEPSEAPSASGMQNLENCVRLVGFGLDSDEEDNGVLDPYFHSEDECNLYTENDDAASIPLCWDSIQLEDNREGNEDFEWEEVDGRVDEREFLSMFTAEDDRSVSASVSPLIGLGEEVGVVRVGGMENLEWEVLLNANNLDTNPDLDRDAEPYFGDHDDYIYTAEYEMMFGQFTENENPLMGRPPASLSVVQHLPSVVLTKEDVENNNALCAVCKDEFNVGEQAKELPCSHRYHGDCIIPWLGIRNTCPVCRYELPTDDADYERRRSQRSGRS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00594 461 ProSiteProfiles Zinc finger RING-type profile. 399 440 IPR001841 -
Bva05g00594 461 SMART ring_2 399 439 IPR001841 -
Bva05g00594 461 PANTHER - 87 458 - -
Bva05g00594 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 446 IPR013083 -
Bva05g00594 461 CDD RING-H2_RNF126_like 399 440 - -
Bva05g00594 461 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 87 458 - -
Bva05g00594 461 Pfam Ring finger domain 399 440 IPR001841 -
Bva05g00594 461 SUPERFAMILY RING/U-box 380 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00594 Bva-Chr5 2965526 2967205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00594 244 446 C3H Transcription Factor Family AT5G60820 49.302 2.60e-57 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00594 - - adu:107469048 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00594 05 2965526 2967205 Bva05g00594 05 2965526 2967205 ECH