Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00593 ATGAAAGTTCGAGCGGTGAAGCTGAGGGAAGCCCACAAGGCTGCGGACAATGGCGGCCCTTCCTTCTGCTTCATCTTGTGGGACCAACAGGCTCAACACCTCGTCACCGCTTCCTCTTCCGATGTTTCCATTTCCATTCATGACCCTCTCCTTCCTTCAAGTATTCCGAGGATCCTCCGCCACCACCTCGATGGTGTTACCGCTTTGGCTCTTAGCCCTAATTGCACTTGTCTTGCATCGGGATCCGTCGATCGCTCCGTTAAGCTCTACAAGTTCCCAGgtggggagttccAGACTAACATTACCAGGTTCACACTTCCGATACGTTCCCTAGCATTTAATAAATCAGGGAGTATATTGGCAGCTGCCGGTGATGATGAGggcattaaatttattaatacaatAGATGGTTCTATTGCAAGGGTCCTCAAAGGGCATAAAGGGTCTATCACCGGCTTAGCATTCGATCCCAATGGTGAATACTTAGCATCTATAGATTCAACAGGAACTGTGATTTTCTGGGAACTCCTGTCAGGAACAAGTGTTCATAATCTTAAAGGCATTGCTCCTGACATTGGAGCAGATGTTTCTGCTATGAATGTTCTTAGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCAGGGTTGAACAATGATGTAGTTATGTATGATAGAGACACGGCTGAAATGTTGTTTTCATTGAGAGGCGATCACATACAACCTGTATGTTTCTTGTCTTGGTCACCCAATGGCAAGTACATAGCTACTTCTGGTTTAGATAGGCAGGTCCTTATCTGGGATGTTAGTAGGAAGCAGGACTTAGATAGacaaaaatttgatgaaagaATATGTTGCATGGCTTGGAAGCCAATCGGTAATGCTTTAACCGTTATGGATGTTTCGGGAAAGTATGGCATCTGGGATTCCGTTATCCCTTCATCTATGAAATCTCCTACAGAGGATGTCCCTGCACAATCTAAAAACAGTAATGGGCTTCTTCTGTTTGATGAGGAGGTTCCAGACCCCAGTGTAAGTGGAAGTATAAGTGATCTTGGTGAAGAAAGCAATGGTGAGTTCGAACCACCTACTAGGAAAAGATTACGCAAACAGCTGCTGAGTGAGGAAAACTTGGATGAGGATGGCACTGGTGAAGGGACTATATATGCAAAGATTgaatcttataaaaagacaaatcgCAGGcacaaagaaaatttggagGCTGTTAATTTGGGACCCAGAAGCACAATGACAACATCCAAGTCAAAAATGCAAGAGGCATTTCAGCCAGGATCCACCCCTGCGCAGCTTGGAAAAAGGCGCTTTTTATGCTACAACATGCTTGGAAGTATAACCACAGCTGAACACGATGGATACTCCCACATAGAGATTGATTTCCATGATACTGGCAGCGGTCCACGAGTTCCATCAATGACTGATCATTTTGGATTTACAATGGCTGCATTAAATGAGAAGGGAAGTGTCTTTGCAAATCCTTGCAAAGGGGAGAAGAACATGAGTACGCTAATGTATCGCCCATTTAGTAGCTGGGCAAATAATAGCGAGTGGTCTATGCGttttgaaggagaagaagtGAAGGTTGTTGCGCTTGGTGCTGCTTGGGTGGCTGCAGTAACTAGTTTTAATATTCTTCGCATCTTCACTGAGGGTGGTTTGCAGAAACATGTTATTTCTTTGAACGGGCCAGTGGTCACTGCATCAGGTTTCAAGGATAAACTTGCGGTTGTCACTCATGCCTCTGGTTGCCTTCCCTCAAGTGATCAGATACTAGAGTTCAGAGTATTTGATATACCTACTGGGACCCAACCCCTTCTAGGCCGCTTGCCATTAACTCCTGGTTCATCACTAACATGGTTTGGACTTAGCGAAGAAGGCCAACTGAGTTCTTATGATTCTAAGGGTGTGCTAAGGGTGTTCACTAGCCAATATGGTGGTAGCTGGCTCCCACTCTTCAGTTCTAATAAAGAGAAGTCTGATGAAAACTATTGGGTTGTGGGGTTGAATGCAAGCAAGTTATTTTGTGTGATTTGCAAAAATCCCGAAATCTTCCCACAGGTGATGCCCAAACCAGTACTCACTCTATTGAATCTTTCATTTCCTCTCGCTTCATCGGACCTGGGATCTGAAGCCCTTGAACATGAGTTTATAATGAATAGCACGCGTCTTTTTGAGATTCAGAAAAGAATGGAAGAAATGGCTAGTGCTGGTTTTGACACCAGTTCACTTGATGACGAGGCTTTCAATATGGAAGCAGCTCAAGATAGATGCATACTTCGGCTTATTGCATCATGCTGCAATTGTGATAAGCTGGTCAGAGCCACTGAACTTATGAAGCTTCTATCACtggaaaaatcaatgaaaGGCGCAATAAAACTTGTTACTGCTCTGAAGCTCCCAAACTTGGCTGAAAGGTTCAGTAACATATTGGAGGAAAAGTTGCTgcatgaaatgaagaaaactacaGAAACTAAGCTCCCAGACAAGCGTCCTGCATCTATTATAGCTGCTGTTCCACTTAGCAGTAGCAAGGTTCCATCTCTGACTGATGCATCGGAAACAGTTAACTTTTCCTCATCTCCGAAATTATCTGCACCTTTATTCACGAAGAAAGTCAAAACACAAGAGGAAGCTAAAAATGGAACTTATAAAACTGCTGTAATGAATGAGACTGTGAAGGCAAAGCATACAGGGgatgataaaattgataaggaGGAGAAGCAGGTAGGGGAAATGCGTCAGGTGCAAGATGGTCTTTCACACGATTCTTCTATGAAGCCATCAAATAAGCAGCAAGTTAACAAGTTAGAGGCAAGTACGGCACAATCAATTCGCCCATCTAATCCATTTTTGAAGGCATCTATCAAATG 2885 0.4191 MKVRAVKLREAHKAADNGGPSFCFILWDQQAQHLVTASSSDVSISIHDPLLPSSIPRILRHHLDGVTALALSPNCTCLASGSVDRSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSILAAAGDDEGIKFINTIDGSIARVLKGHKGSITGLAFDPNGEYLASIDSTGTVIFWELLSGTSVHNLKGIAPDIGADVSAMNVLSWSPDGETLAVPGLNNDVVMYDRDTAEMLFSLRGDHIQPVCFLSWSPNGKYIATSGLDRQVLIWDVSRKQDLDRQKFDERICCMAWKPIGNALTVMDVSGKYGIWDSVIPSSMKSPTEDVPAQSKNSNGLLLFDEEVPDPSVSGSISDLGEESNGEFEPPTRKRLRKQLLSEENLDEDGTGEGTIYAKIESYKKTNRRHKENLEAVNLGPRSTMTTSKSKMQEAFQPGSTPAQLGKRRFLCYNMLGSITTAEHDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNEKGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSFNILRIFTEGGLQKHVISLNGPVVTASGFKDKLAVVTHASGCLPSSDQILEFRVFDIPTGTQPLLGRLPLTPGSSLTWFGLSEEGQLSSYDSKGVLRVFTSQYGGSWLPLFSSNKEKSDENYWVVGLNASKLFCVICKNPEIFPQVMPKPVLTLLNLSFPLASSDLGSEALEHEFIMNSTRLFEIQKRMEEMASAGFDTSSLDDEAFNMEAAQDRCILRLIASCCNCDKLVRATELMKLLSLEKSMKGAIKLVTALKLPNLAERFSNILEEKLLHEMKKTTETKLPDKRPASIIAAVPLSSSKVPSLTDASETVNFSSSPKLSAPLFTKKVKTQEEAKNGTYKTAVMNETVKAKHTGDDKIDKEEKQVGEMRQVQDGLSHDSSMKPSNKQQVNKLEASTAQSIRPSNPFLKASIK 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00593 961 SMART WD40_4 227 267 IPR001680 GO:0005515
Bva05g00593 961 SMART WD40_4 136 175 IPR001680 GO:0005515
Bva05g00593 961 SMART WD40_4 94 133 IPR001680 GO:0005515
Bva05g00593 961 SMART WD40_4 52 91 IPR001680 GO:0005515
Bva05g00593 961 SMART WD40_4 178 224 IPR001680 GO:0005515
Bva05g00593 961 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Bva05g00593 961 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Bva05g00593 961 Pfam WD domain, G-beta repeat 237 267 IPR001680 GO:0005515
Bva05g00593 961 MobiDBLite consensus disorder prediction 899 961 - -
Bva05g00593 961 MobiDBLite consensus disorder prediction 342 366 - -
Bva05g00593 961 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Bva05g00593 961 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 946 - -
Bva05g00593 961 SUPERFAMILY WD40 repeat-like 25 308 IPR036322 GO:0005515
Bva05g00593 961 MobiDBLite consensus disorder prediction 899 917 - -
Bva05g00593 961 CDD WD40 27 308 - -
Bva05g00593 961 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Bva05g00593 961 Pfam Minichromosome loss protein, Mcl1, middle region 426 707 IPR022100 -
Bva05g00593 961 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 176 - -
Bva05g00593 961 Gene3D - 21 330 IPR015943 GO:0005515
Bva05g00593 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Bva05g00593 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Bva05g00593 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bva05g00593 961 MobiDBLite consensus disorder prediction 922 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00593 Bva-Chr5 2959751 2964764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00593 65 274 U-box Gene Family AT2G33340 22.535 4.13e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00593 K11274 - qsu:112010612 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00593 05 2959751 2964764 Bva05g00593 05 2959751 2964764 ECH