Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00579 ATGGGGAGAGGAAAGGTGCAGTTGAAGAGGATTGAGAACAAGATCAACAGACAGGTGACGTTCTCCAAGAGAAGGTTAGGTTTGCTCAAGAAAGCCCACGAGATCTCTGTTCTTTGCGATGCCGAGGTTGCTTTGATTGTCTTCAACACCAAGGGCAAACTTTTCGAGTATTCCAGTGATCCCTGTATGGAAAGAATTCTTGAACGGTACGAAAGGTATTCCTATGCAGAGAGGCAGCTGGTTGGAGTTGATCAACAATCAAGTgGAGACTGGAATCTGGAACGTGCAAAGCTCACGGCTAGGATGGAGgttttacaaagaaatataagGCATTTTAAGGGAGAAGATCTAGATGTCCTAAGTTCCAAAGAACTTCAGAAATTGGAGCAACAACTTGACTCGGCTCTCAAACAAATTAGAACACGAAAGAATCAACTCATGTATGAATCTATCTTAGAGCTTCAGAAAAAGGATAAGGCACTCCAAGAACAAAACAATGTTCTCTCAAGGAAGgtaaaggagaaagagaaggcATTGGCTCAACAAGCACAGTGGGAACAGCAAAATCATGATGTGGATAATACCTGTGTCCTTCTACCACAACCTTTGCAGCCCTTTAATATTGGAGGGTCTAACCGGGCAAGAATTGATGGAGGAGATAATGAAGGAACTCCAACTCAACCTCAAGCTAATACTCTCCTTCCCCCATGGATGCTTCGCCCTCAAAATTa 731 0.4131 MGRGKVQLKRIENKINRQVTFSKRRLGLLKKAHEISVLCDAEVALIVFNTKGKLFEYSSDPCMERILERYERYSYAERQLVGVDQQSSGDWNLERAKLTARMEVLQRNIRHFKGEDLDVLSSKELQKLEQQLDSALKQIRTRKNQLMYESILELQKKDKALQEQNNVLSRKVKEKEKALAQQAQWEQQNHDVDNTCVLLPQPLQPFNIGGSNRARIDGGDNEGTPTQPQANTLLPPWMLRPQN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00579 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 234 - -
Bva05g00579 243 MobiDBLite consensus disorder prediction 208 243 - -
Bva05g00579 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bva05g00579 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bva05g00579 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 MobiDBLite consensus disorder prediction 222 243 - -
Bva05g00579 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 Coils Coil 151 181 - -
Bva05g00579 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Bva05g00579 243 Coils Coil 95 115 - -
Bva05g00579 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Bva05g00579 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva05g00579 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva05g00579 243 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva05g00579 243 Coils Coil 125 145 - -
Bva05g00579 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00579 Bva-Chr5 2883445 2887772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00579 1 206 MADS-box Gene Family AT1G26310 62.201 1.42e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva05g00579 K-box 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00579 K09264 - qsu:111991050 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01123 06 8933747 8938236 Bva05g00579 05 2883445 2887772 ECH
Bva03g01968 03 17681934 17686766 Bva05g00579 05 2883445 2887772 ECH
Bva04g00397 04 2354037 2360363 Bva05g00579 05 2883445 2887772 ECH
Bva05g00579 05 2883445 2887772 Bva05g00579 05 2883445 2887772 ECH