Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00578 ATGGACTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTTTGTGTCCAGTGATACACTCTCACCACCTAATACGCTATCCAGAAGCAAAAATTCCTTCTTGGGTTGGGACTTGAAAACTCCTTGTAGTTTTGGCAACGACATGTTAGCCTCAGGTCAACAAAACATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCAGAAATGTTGGGGAAACAACTGTCCGATGATTCAATTGCTGGTGTTCCTAGCAGAAAGCTGGATGGCAGTCCTGTCGGAAGAACCATTATGGGTGCTCCAAATGGGTTTTGTGGGGGAGAAGACTCCAATTCGAACCTGTCAAACTCTGGGGTTGACTCAAATTGTCGTGATTCGCTCATTGATTTGAAGCTGGGACGATTTGCTGATCACAGGGATGCTCGTGATTCGACATTTTCCAAAGGAGCCTCCATTTTGTCTTCATCCAAGTCATCCACACCACCTAAAAGAGTGCGAGCTTCAGGGGCACAGTCGCAAACAGTCTTCTGCCAAGTCTTTGGCTGCAACAAGGATCTGAGTGCCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCAAAAGTTATAGTGAACGGTATCGAACAGAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGTCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCCGGCCACAACGAGCGTCGAAGAAAGCCCCAAGTACATATTCACTCTGGAAAGGCCGGGAGGTTGCTTCAGCCATATAGTGATGGCAGACTCCAGGGGACTATGCTAACAGCAGCATCGTTTATTTGTCAAGAGATACTTCCTTGTGGGGTTTTGCGCTCTGAGAAATATGGAACCAATGACTGGTGGAGACCTATAAAAGTTGAAGATGGGACTGAGTACAGGAATCTTTCTGCTATTCCAGTCACAAATGGGCATCCACAATCAAGATCTCTATTTCCTCCATATAATGTTGAGaaacaatttccttttcttcatgaAAGTAGTGCCACAACCACTACAGGAAGCATCTTCTGTGAGAACAATAGCCAATATCCACCAGCTCTTGGTGGTCCAAATTCTGGTCCACGATCATTATTTCAAGACAATTCCTTAGGCAGCGAGGactttaatgtttttgatGCATCATCAACTGTTCAAGGATTGTCGGGAATTTCAGACACTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCATTCGTCAGGAATTCCCGTGGCTCGCTCCTTGGTTATCCCAAGCAGCCATAGTAGCCATTACAGCATAAGTCTGGTATCTGAAAAGATCATAGGAATAAGCTCACAGTCACAGGATTCTAGAAGTGGGGTATCTGTGTCAGATAGGTTTCCATCTGACATGAACGCTGCCGGCGGGAGTCAACTCTGTCCGGTGTTGATATCAGACAATAATGAcattgtcaactttgaaatggCAGATGGGATTTTCCAAGGCTCAGATTTTGTCAACATGAAAGATCGTCTTTCTTGTGAAGATGGCCCTACTATTGACTTACTTCAACTCTCTTCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCATGCaggtgaagaaagaaaatgattcatCCTGCTCTCTCCGGATCACTTA 1682 0.4346 MDSWSYVSEEKGFVSSDTLSPPNTLSRSKNSFLGWDLKTPCSFGNDMLASGQQNIENQGFEELGFPEMLGKQLSDDSIAGVPSRKLDGSPVGRTIMGAPNGFCGGEDSNSNLSNSGVDSNCRDSLIDLKLGRFADHRDARDSTFSKGASILSSSKSSTPPKRVRASGAQSQTVFCQVFGCNKDLSACKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLSEFDDVKRSCRKRLAGHNERRRKPQVHIHSGKAGRLLQPYSDGRLQGTMLTAASFICQEILPCGVLRSEKYGTNDWWRPIKVEDGTEYRNLSAIPVTNGHPQSRSLFPPYNVEKQFPFLHESSATTTTGSIFCENNSQYPPALGGPNSGPRSLFQDNSLGSEDFNVFDASSTVQGLSGISDTGCALSLLSSQSQNSSSHSSGIPVARSLVIPSSHSSHYSISLVSEKIIGISSQSQDSRSGVSVSDRFPSDMNAAGGSQLCPVLISDNNDIVNFEMADGIFQGSDFVNMKDRLSCEDGPTIDLLQLSSQLQRVEHQRQSMQVKKENDSSCSLRIT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00578 560 Pfam SBP domain 175 248 IPR004333 GO:0003677
Bva05g00578 560 MobiDBLite consensus disorder prediction 145 165 - -
Bva05g00578 560 PANTHER 1 PROTEIN, PUTATIVE-RELATED 43 560 - -
Bva05g00578 560 Coils Coil 528 548 - -
Bva05g00578 560 MobiDBLite consensus disorder prediction 144 165 - -
Bva05g00578 560 Gene3D - 165 236 IPR036893 GO:0003677|GO:0005634
Bva05g00578 560 SUPERFAMILY SBT domain 173 253 IPR036893 GO:0003677|GO:0005634
Bva05g00578 560 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 560 IPR044817 GO:0003677
Bva05g00578 560 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00578 Bva-Chr5 2865905 2870273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00578 126 291 SBP-box Gene Family AT1G69170 54.819 5.52e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva05g00578 SBP 4.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00578 - - gmx:100777766 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01125 06 8959175 8963407 Bva05g00578 05 2865905 2870273 ECH
Bva05g00578 05 2865905 2870273 Bva05g00578 05 2865905 2870273 ECH