Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00570 ATGCGAGGCCATAGAAGTGAACGAGCTCCTCTATTGGAACACCGAGAAGAGGGAAAGAGGGACGATGCCCCGAGTCAATTGACTGACCTCGAACATGGCGATGCAGTGCCGGCGGCTAATGTGGGATTCTGTCGAGTGCTTGCACTTGCAAGGCCTGATGCTGGGAAGTTGATAATTGCGACTTTGGCTCTGTTGGTTGCATCCACATCGAGTATATTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGAGATATCAAAACTCCTGAAGAGAAAGCTAGAGCTCTTGATGCTGTCAATAACACCATACTAAGTATCTTTCTGATTGTTGTTGTTGGTTCAGTTTGCACGGCACTTCGAGCATGGCTTTTTTCTTCTGCTAGTGAAAGGGTTGTTGCTCGATTGAGAAAGAGACTGTTTACCCACCTGATATGCCAGGAGATAGCCTTTTTTGATGTCACTCGAACTGGGGAACTTCTAAGTAGGCTGTCTGAAGATACACAGATCATAAAGAATGCAGCAACTAGTAATCTTTCTGAGGCCCTGAGAAACCTATCAACTGCATTTATTGGTCTTGGCTTCATGTTTACAACCTCATGGAAACTAACATTGTTGTCTCTGGCTGTTGTACCTGCTATTTCTGTTGCTGTACGAAAATTTGGACGCTTCCTGCGGGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGTGCTATAAGAACAGTAAGATCTTTTGCTCAAGAAGAATACGAAATATCACGCTACTCTGGGAAAGTTGATGAGACACTTAACCTTGGACTTAAACAAGCTAAAGTGGTTGGACTGTTTTCTGGTGGCCTTAATGCTGCATCTACACTGTCGGTTATCGTAGTTGTGATATATGGAGCTAATCTGACAATCACGGGTTCCATGTCTGCGGGTGATCTTACATCTTTCATTCTTTACAGTCTCACAGTTGGGTCTTCTGTGTCCGGTCTTTCATCATTGTATACAGTAGCTATGAAAGCTGCAGGTGCCAGCAGAAGGGTATTTCAGCTTCTGGATCGTGAATCCTCCATGCCTAAGTCAGGAAATAAGTGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTTGATGATGTCTGGTTTTCTTATCCGTCACGTCCTGATCATACAATCCTAAAGGGTATTACATTGAAACTGCGGCCTGGCTCAAAAGTTGCTCTTGTTGGTCCAAGTGGAGGTGGAAAGACTACAATCGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTTTAGTAGAAATATCACATGAACATCTACACAGAAAAATCAGCATAGTGAGTCAAGAGCCGATTCTTTTCAACTGTTCCATAGAGGAGAACATAGCTTACGGATTTGACGGCAAAGTTGACGCTGTGGATATAGAAAATGCAGCTAAAATGGCCAATGCCCATGAATTCATATCGAAATTCCCAGAGAAATATCAAACCCATGTTGGAGAACGTGGGGTAAGGCTTTCAGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGAACCCAAGGATTCTCCTCCTCGATGAAGCTACTAGCGCTCTGGATGCTGAAAGCGAGTACCTAGTACAGGATGCAATGGATTCTCTAATGAAGGGAAGAACAGTTCTAGTTATTGCTCACAGGCTATCAACTGTTAAAAGCGCAGATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTTGAGCGTGGTACCCATGAGGAACTTTTAAGCAAGAATGGTGTCTACACTGCATTAGTCAGGAGACAACTGCAATCAACAAAAACTGAAGTCTA 1886 0.4343 MRGHRSERAPLLEHREEGKRDDAPSQLTDLEHGDAVPAANVGFCRVLALARPDAGKLIIATLALLVASTSSILIPKFGGKIIDIVSGDIKTPEEKARALDAVNNTILSIFLIVVVGSVCTALRAWLFSSASERVVARLRKRLFTHLICQEIAFFDVTRTGELLSRLSEDTQIIKNAATSNLSEALRNLSTAFIGLGFMFTTSWKLTLLSLAVVPAISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEEYEISRYSGKVDETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTITGSMSAGDLTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRESSMPKSGNKCPLGDQDGEVELDDVWFSYPSRPDHTILKGITLKLRPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHEHLHRKISIVSQEPILFNCSIEENIAYGFDGKVDAVDIENAAKMANAHEFISKFPEKYQTHVGERGVRLSGGQKQRIAIARALLMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSADTVAVVSDGQIVERGTHEELLSKNGVYTALVRRQLQSTKTEV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00570 628 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 624 - -
Bva05g00570 628 Gene3D ABC transporter type 1, transmembrane domain 108 379 IPR036640 GO:0005524|GO:0016021
Bva05g00570 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 620 IPR027417 -
Bva05g00570 628 MobiDBLite consensus disorder prediction 1 28 - -
Bva05g00570 628 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Bva05g00570 628 PIRSF ABC_prm/ATPase_B 5 628 - -
Bva05g00570 628 Gene3D - 380 624 IPR027417 -
Bva05g00570 628 CDD ABC_6TM_AtABCB27_like 60 356 - -
Bva05g00570 628 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 619 IPR003439 GO:0005524
Bva05g00570 628 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 624 IPR039421 -
Bva05g00570 628 Pfam ABC transporter transmembrane region 57 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g00570 628 Pfam ABC transporter 400 550 IPR003439 GO:0005524
Bva05g00570 628 SUPERFAMILY ABC transporter transmembrane region 45 363 IPR036640 GO:0005524|GO:0016021
Bva05g00570 628 SMART AAA_5 409 602 IPR003593 -
Bva05g00570 628 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva05g00570 628 MobiDBLite consensus disorder prediction 1 29 - -
Bva05g00570 628 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00570 Bva-Chr5 2828044 2832830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00570 118 628 Calmodulin-binding Proteins AT2G36910 36.538 6.32e-95 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00570 - - zju:107419028 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00570 05 2828044 2832830 Bva05g00570 05 2828044 2832830 ECH