Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00569 ATGGCCACAAGGGTTGCAACTGGAAGCAGTCTCCGTCGCCTCACATCGGCGGCTTCTGCTCACGGGCTTGTTTTCCGAAACCACAACACTCATTGTCTCTCTACGGCTCCCAGTTTCGATAACCCATTTCATGGCAAATTTTCCCAGCAATCCCAGTTTAGTAAACTAAGGAAAGAGACTTCATTAGCCAATCTCTTCCTGAGGTACGGGTTCCCTCCATCTCAGTTTCATGATTTTCTCTCGAAGAATCACTTTCTcttgaattataatttgaagGAGTTAAGGAAGTCTCTGGATACTCTATTATCATTCAAAATTCCGCAGAAATCTATCATTTCTTTGATATGCGATTGTCCTGGGGTATTGGAATATCAGTTTCTTAAGAAATGGGCGGTGGGTTTGGCAGAACTACGGGATTTGACTACTTCCCCGTTGATAATCAGGAGTTTTTTACAATATTCTAAGGGGTTTCAGTTAGACTCTGTTGAATTGTCAAAAAGTGTGGAGATTTTGAGGGGCTTTGGGTTTACCAACGCTTCTATATCTCGGGTTTTAGAAGAATTTCCTAGTGTGCTCCTGATGAATAACAGAGAAATTCAGTGTACGATAGAATTTTTAGTGGAATTTGGGATTCCCAGGGATGAGATTGATCGAGTTATTCGTTTGTATCCAAGAACTATAGGACTTGGTGTTGAAGACAGGTTAAAACCATTGCTTTGTGAGTTACGGGATTTAGGATTTTCTGATGATGAGGTGAGGAAAGAGGTTCTTATGGATCCAAGGATTCTAGGAATGGAAGTAGGGGAGTTTTCACGATGTCTTCAATTGCTGAGGACTTTGAAATGCCGAGTTCCAATCAAAGAGAAGGTTTTTGGATGTGGTGTACTGAGAGCTGGTTTTGAAGTAAAACTGAGGGTGGATTGTTTATGTAATCATGGTTTAACTCGTAGAGAAGCTTTCAAGGTCTTATGGAAAGAGCCAAGGTTGATTATGTATGACATAGAAAACATTGAGAAGAAGATTGAATTTTTAGTGCAACAGATGAAATATAGTGTTGACTGTTTGCCTGACGTTCCAGAATATTTGggtgtaaattttgaaaagcaGATTGTTCCTCGACACAATGTGATAGAGTATCTGAAAGGAAAAGGTGCAATTGATTTTCAGTTGGGGTTGAAGGATCTAATAAAACCCAGTAGGGTTAAATTTTACAATCTTTATGTCAAACCGTATCCAGAGTGTGAGAAAATTTATGGACGATTTTCCAGAAATCTTGAAGTTAAAAAAAGCAAACATCCACCTGGGCTCTGGAAGGTCTTTAGACCACAGAAGTTCCCCGAAACCAAAGAGGATGTGAAAAACATCAAATCCTTCATGGAAAATTTGCCTCGAGGACCATA 1400 0.3907 MATRVATGSSLRRLTSAASAHGLVFRNHNTHCLSTAPSFDNPFHGKFSQQSQFSKLRKETSLANLFLRYGFPPSQFHDFLSKNHFLLNYNLKELRKSLDTLLSFKIPQKSIISLICDCPGVLEYQFLKKWAVGLAELRDLTTSPLIIRSFLQYSKGFQLDSVELSKSVEILRGFGFTNASISRVLEEFPSVLLMNNREIQCTIEFLVEFGIPRDEIDRVIRLYPRTIGLGVEDRLKPLLCELRDLGFSDDEVRKEVLMDPRILGMEVGEFSRCLQLLRTLKCRVPIKEKVFGCGVLRAGFEVKLRVDCLCNHGLTRREAFKVLWKEPRLIMYDIENIEKKIEFLVQQMKYSVDCLPDVPEYLGVNFEKQIVPRHNVIEYLKGKGAIDFQLGLKDLIKPSRVKFYNLYVKPYPECEKIYGRFSRNLEVKKSKHPPGLWKVFRPQKFPETKEDVKNIKSFMENLPRGP 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00569 466 Pfam mTERF 304 399 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 Pfam mTERF 160 275 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 Gene3D Transcription termination factor 3, mitochondrial 195 425 IPR038538 -
Bva05g00569 466 PANTHER CGI-12 PROTEIN-RELATED 74 461 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 253 283 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 320 351 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 77 107 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 217 248 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 147 177 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 352 386 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 SMART mt_12 182 212 IPR003690 GO:0003690|GO:0006355
Bva05g00569 466 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 74 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00569 Bva-Chr5 2825445 2827601 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g00569 mTERF 3.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00569 - - pper:18777031 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00569 05 2825445 2827601 Bva05g00569 05 2825445 2827601 ECH