Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00563 ATGAGGACTAGAGAAGGTTTTGAAGCTAAGCAAGAGGGAGACACCTTTATTATTGAGAAGCTGATCTCAAAGGCTGCACCCTCTACGTCAAGACAATGGTCAGCATTCAGAAATCCAAGAATTGTGAGAGTTTCTCGAACGTTTGGAGGAAAAGATAGACACAGCAAGGTTTGCACCGTTCGGGGACTGAGGGACCGGCGAATCAGGCTGTCAGTAACCACCGCAATTCAGTTGTATGATCTTCAAGACAAGCTTGGGGTCAGCCAGCCCAGCAAGGTCATAGATTGGTTACTTGAAGCCACtaaaaatgatattgataTGCTGCCACCACTTCAATTTCCTCAGAGTTTTGCTCAATTTCATCACCAAACCCTACTGCCTCACCATGAATCAAGTGCAGCCTCCTTCTATGGTGCCAATTCCACATTTCTGAAGGATGGGGAAAGTCAAAATCTTTTGCCCAAGTCAAGTTTTTGGGATAGGGAAAGTAATGAAAGAGGATCTATGTTTGAGAAAGGAAAGTGGGTAAAAACAAATGAACATGAAGGAGAGGATATTGGAATTAGCAGCAGCCAGATTTTAGCTCAGAAGCTTTTCCCCATGGGGACTCACAGTACTCCCTTACCTTTAATGCTAAATAATGCCATCACATATAATTACCCCTACCATAATTCTGACCCTTCAAGTCTATCTCTATCccactttggaactagtcatggtttatttccttcttctcaTCAGGCAGATCCCCACTCGTGCAGTGGAAATGGCTTGCAATTTCCTTCTGGTTctcaattattcttttgtcCACCTTCTGCTGCAGCGTCATCACTTTCTGCTCCTTGTGCTCcatacaatattaaaataagttcaGCAGAAAGCGACTCAAGAGTACCATTCAACCAGATTCATCAGTTCTTGAGCTCAACTCCTCAAGCCTTGACTCAGCCTCTCATTCCACCATTTAGTTCAAAGCTTCTTGGTTTAGATAATAACAGTCGTAGTAAAGCAGATAAGGATAGTGCTCGTGCTTG 1034 0.4043 MRTREGFEAKQEGDTFIIEKLISKAAPSTSRQWSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVTTAIQLYDLQDKLGVSQPSKVIDWLLEATKNDIDMLPPLQFPQSFAQFHHQTLLPHHESSAASFYGANSTFLKDGESQNLLPKSSFWDRESNERGSMFEKGKWVKTNEHEGEDIGISSSQILAQKLFPMGTHSTPLPLMLNNAITYNYPYHNSDPSSLSLSHFGTSHGLFPSSHQADPHSCSGNGLQFPSGSQLFFCPPSAAASSLSAPCAPYNIKISSAESDSRVPFNQIHQFLSSTPQALTQPLIPPFSSKLLGLDNNSRSKADKDSARA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00563 344 Pfam TCP family transcription factor 50 150 IPR017887 -
Bva05g00563 344 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Bva05g00563 344 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 329 IPR005333 GO:0003700
Bva05g00563 344 PANTHER TRANSCRIPTION FACTOR TCP17 4 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00563 Bva-Chr5 2785169 2787337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00563 34 278 TCP Transcription Factor Family AT5G60970 44.944 2.94e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva05g00563 TCP 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00563 - - gmx:100804574 336.65