Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00557 atggCGGAATCAGTAACACCAGATGCAATTTCTATCTTGCTCGCCAACCCATCACCGGATTCTTCATCGGAGTTTCCGCAGATTATCGTCCAAGTTCTAGATCTCAAGCAAAGCGGTAACCGATACATGTTTACTGCTAGTGatggaaaaaagaagctaAGATCAATTCTTCCCTCGAATCAGAATTCACAAGTCATGTCAGGAAATATTCAGAGTCTGGGTCTCATTCGCATCCTTGATTACACTCTCAATGATATCCCAAATAAGTCAGAGAAATATCTCATTGTCACAAAATGTGAACCGGTCTGTTCGGCACTTGAAATGGAGATAAAATCTGTGGTCAAGAGTGACGAATCGGGTATTCTTTTGAAACCAAAGGAagagaatgaaatagaaaggGAGGTAAAAAGCGAAGGGGCTGGCATTATTTTGAAGCCAAAGCAAGAAATAGTTGCTAAATCAGCTGCTCAGATAGTACATGAACAACACGGAAACATGGCTACTGCTGCACGAATGGCAATGACACGTAGGGTTCGTCCTCTTGTTTCCCTGAATCCTTATCAGGGCAATTGGACAATAAAGGTCCGTGTTACAAGCAAAGGAAACATGCGCACCTATAAGAACGCCAGAGGGGAAGGTTGTGTTTTCAACGTGGAATTGACAGATGAAGATGGCACGCAAATCCAAGCAACGATGTTTAATGAAGCTGCAAGGAAATTTTATGAGAAGTTTGTACTTGGAAAGGTTTATTACATTTCCAAGGGAACCCTGAAAGTTGGTAACAAGCAGTTCAAAACTGTCCAAAACGATTATGAAATgacattaaatgaaaattcgGAGGTAGAAGAGGCAACCAATGAAGCAATTTTTGTTCCAGAAACTAGTTTCAAATTTGTTCAGATTGATGAGTTGGGTCCATATGTAAATAAGAATGATCTTGTGGACGTGATTGGAGTTGTTCAAAATGTGTCTCCATCAATGAGCATTCGTAGAAAGAGTAACAACGAGACTGTCCCTAAACGTGATATTACTATTGCTGACGAAACAAAGAAGACAGTTGTTGTCTCCTTGTGGAATGACCTTGCAACTGGTGTAGGGCAGGAGTTGTTGGACGTTGCTGATAAATCTCCAATAGTTGCAATTAAATCCCTCAAGGTTGGGGATTTTCAAGggGTTTCCCTTTCAGCTATAAGCAAGAGTGCCATCCTAGTCAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTATGATTCTGAAGGTAAAGGTGCATCAATGGCCTCTGTAGGTTCTGGTTTGAGTTCAGTATCCAAGAATGGAATGAGATCAATGTACTCTGACCGTGTTTCTGTCTCACAAATAACCTCAAACCCATCCTTGGGGGAGGACAAGCCTGCGTTTTTCAGTATTAGAGCATACATAAGCTTTATTAAGCCTGACCAGACAATGTGGTACCGTGCTTGTAAAACTTGCAACAAAAAGGTGACTGAAGCCATTGGTTCTGGGTATTGGTGTGAAGGCTGTCAGACAACTAATGAAAAGTGCAATTTAAGATACATAATGGTCGTAAGAGTTTCAGACGCAAGTGGGGAAGCTTATGTCTCTGTCTTCAATGAAGAAGCTGAGAAGATTGTTGGTTGCTCTGCTGATGAGCTAGATAACCTGAAGACACAGgaggGCGAAGATAATCCAtaccaacaaaaattgaagcaaGTTACTTGGGTTCCTCATCTTCTTCGTGTTAGCGTGTCTCAGAATGAGTACATGAATGAGAAGAGGCAGAGGATAACAGCCAGAGCAGTGGCCCCAGTTGACTTTGCTGCAGAGTCAAGATTTCTCTTGGAAGAGATATCAAAGATGAAAGCTTCTCAATA 1877 0.4001 MAESVTPDAISILLANPSPDSSSEFPQIIVQVLDLKQSGNRYMFTASDGKKKLRSILPSNQNSQVMSGNIQSLGLIRILDYTLNDIPNKSEKYLIVTKCEPVCSALEMEIKSVVKSDESGILLKPKEENEIEREVKSEGAGIILKPKQEIVAKSAAQIVHEQHGNMATAARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVGNKQFKTVQNDYEMTLNENSEVEEATNEAIFVPETSFKFVQIDELGPYVNKNDLVDVIGVVQNVSPSMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATGVGQELLDVADKSPIVAIKSLKVGDFQGVSLSAISKSAILVNPDIPEAKKLRCWYDSEGKGASMASVGSGLSSVSKNGMRSMYSDRVSVSQITSNPSLGEDKPAFFSIRAYISFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQTTNEKCNLRYIMVVRVSDASGEAYVSVFNEEAEKIVGCSADELDNLKTQEGEDNPYQQKLKQVTWVPHLLRVSVSQNEYMNEKRQRITARAVAPVDFAAESRFLLEEISKMKASQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00557 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bva05g00557 625 Gene3D - 177 286 IPR012340 -
Bva05g00557 625 CDD RPA1_DBD_A 180 283 - -
Bva05g00557 625 Gene3D - 432 621 IPR012340 -
Bva05g00557 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Bva05g00557 625 CDD RPA1_DBD_C 452 620 IPR013955 -
Bva05g00557 625 CDD RPA1_DBD_B 313 419 - -
Bva05g00557 625 Gene3D - 291 431 IPR012340 -
Bva05g00557 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bva05g00557 625 SUPERFAMILY Nucleic acid-binding proteins 179 286 IPR012340 -
Bva05g00557 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Bva05g00557 625 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bva05g00557 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bva05g00557 625 SUPERFAMILY Nucleic acid-binding proteins 447 621 IPR012340 -
Bva05g00557 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva05g00557 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva05g00557 625 Pfam Replication protein A OB domain 308 405 IPR031657 -
Bva05g00557 625 Gene3D - 4 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00557 Bva-Chr5 2750005 2753784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00557 1 625 Core DNA Replication Machinery Family AT5G08020 68.530 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00557 K07466 - qsu:112017680 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00557 05 2750005 2753784 Bva05g00557 05 2750005 2753784 ECH