Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00553 ATGGGCCTAGCTCCACCAGCTTGCCGGCCCACAATGACTATTAAGACTtCGAACGCTGTGCCCAAGAGAGAGCAGGAGAGAACGAAGGTTACGGCAATGGCTTTCTTTGGTAGAGTTGGGAACCTACTAAGGCAAGCAGCAAACAAGCAGATTAGTTCACAATTACGTTCATCGCCATCTGTTTTTCAGGCTATAAGATGCTTGTCATCTGCGCCAAACTCAAGGCTTTTTGTGGGAGGCGTATCATATTCTACAGATGAGAGTAGTTTGAGGGAAGCTTTTTCAAAATATGGTACAGTTGTTGACGCAAGGGTAATTGTGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTCACTTTCACTTCAGTCGAGGAGGCATCAAGTGCCATTCAGGCTTTGGATCAAAAGGACCTTCATGGCCGCATAGTTAGGGTAAACTATGCTAATGAAAGGCCTCGTGGCTTTGGTGGTGGTTTTGGCAATGAACCCCATGGTTCTGGCGCTGGCTTTGGAGGTGCTTATGGTAATGCTCCCTATGGGGGTTCTGGAAGTGGTGGCGGCTATGGCGACAGCACATATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGTGGATATGGTGCAGGAAGTTATGGGTCAAGTGGCAATTACGGGAGTGGAGGTTCTGGCAATAACTATGCGGATAGTTTTGGAAGTGGAAGCACCGATGGCAGTTATGGGGGTTCTGGAAGTGGCAGCGGCTATGGTGATAGTGGTGCATATGGTGGCAATGCTGCTGGAGGTTATGGTAGTGGTGGATATGGTGCAGGAAGTTATGGGTCAGGTGGTAATTACGGGAGTTCAGGTTCTGGCAATAAATATGCTGCTGATAGTTTTGGAAGTGGAAGCGCTGGTGGCAGTTACAGCGGAAGAGGAGTGAATTATGGGAATGATGGTAACTTTGCTGGTGGAAATACCGGAGGTTATGGTGGTAGCAGTGGAAACTTCGGTGTtgctggtggtggtggaggaaGTGACGACCACGGCAGTGCTCCTGGTTTTGGTGGGGCTGCTGGTGAAGGCAGTATTGCTGGTTTTGGTAGCAGTGACAACTCAGGGAATTCTGGGGGTCTTGGTGGCAGTGATAGTTATTCTAGTGCTGGTTCTGGCGGTGACAGTGCCTTTAGTGGATTTCATGGAAGCGAGGGACTTGGATATGGGACTAGCGGTCAATTGGATAGCAAAGAAGGTGACAATCTGGGTGAGGATACTGAAGATTATGGGAAACCATTGGAAGGAAATTACAAGGACGATGGTGATGAAGCTAGTGATTTTGCCAGAAGAGCTTG 1334 0.4798 MGLAPPACRPTMTIKTSNAVPKREQERTKVTAMAFFGRVGNLLRQAANKQISSQLRSSPSVFQAIRCLSSAPNSRLFVGGVSYSTDESSLREAFSKYGTVVDARVIVDRETGRSRGFGFVTFTSVEEASSAIQALDQKDLHGRIVRVNYANERPRGFGGGFGNEPHGSGAGFGGAYGNAPYGGSGSGGGYGDSTYGGNAAGGYGGGGYGAGSYGSSGNYGSGGSGNNYADSFGSGSTDGSYGGSGSGSGYGDSGAYGGNAAGGYGSGGYGAGSYGSGGNYGSSGSGNKYAADSFGSGSAGGSYSGRGVNYGNDGNFAGGNTGGYGGSSGNFGVAGGGGGSDDHGSAPGFGGAAGEGSIAGFGSSDNSGNSGGLGGSDSYSSAGSGGDSAFSGFHGSEGLGYGTSGQLDSKEGDNLGEDTEDYGKPLEGNYKDDGDEASDFARRA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00553 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Bva05g00553 444 MobiDBLite consensus disorder prediction 328 444 - -
Bva05g00553 444 Gene3D - 21 169 IPR012677 -
Bva05g00553 444 SMART rrm1_1 75 148 IPR000504 GO:0003723
Bva05g00553 444 PRINTS Eggshell protein signature 318 336 - -
Bva05g00553 444 PRINTS Eggshell protein signature 245 260 - -
Bva05g00553 444 PRINTS Eggshell protein signature 186 197 - -
Bva05g00553 444 PRINTS Eggshell protein signature 274 284 - -
Bva05g00553 444 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 33 297 - -
Bva05g00553 444 MobiDBLite consensus disorder prediction 360 387 - -
Bva05g00553 444 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 297 - -
Bva05g00553 444 MobiDBLite consensus disorder prediction 411 444 - -
Bva05g00553 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Bva05g00553 444 SUPERFAMILY RNA-binding domain, RBD 69 161 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00553 Bva-Chr5 2733648 2737122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00553 74 207 Eukaryotic Initiation Factors Gene Family AT4G34110 30.519 5.69e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00553 K12741 - gmx:100799124 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00553 05 2733648 2737122 Bva05g00553 05 2733648 2737122 ECH