Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00548 ATGGCGATGGCTGCTCTGAGACGGGAAGGGAGGCGTCTCGCCCCCCTCATCTCTCCTCAACCAATGGCTGCCCTCCGATCCTCCCTCATTGCTGAGGAGCAAATCCCACAGGGAGTGCGCTATATTTCAACTCAAGTAGTCAGAAATCGAATGAAGAGTGTGAAGAGTATTCAGAAAATTACAAAGGCAATGAAAATGGTTGCAGCCTCAAAGCTTCGTGCTATTCAAACTAGAGCCGAGAACTCTCGCGGTCTATGGCAACCATTTATTGCCCTTCTGGGTGACACTCCCAGTGTTGATGTAAAGAAGAATGTCATTGTAACCGTTTCATCAGATAAGGGTCTATGTGGTGGAATTAATTCCACTTCAGTGAAGATAAGCAAGGCATTTCACAAACTGAGTTCTGGACCTGATAAAGAGACAAAGTATGTCGTTTTGGGAGAGAAGGCAAAGGCGCAGCTGATTCGTGACTCAAAGAAAGACATTGAGATTAGCATAACTGAGTTGCAGAAAAATCCCCTGAATTACACACAGGTAGCTGTCTTGGCAGATGACATCTTAAAGAATGTTGAGTATGATGCCTTGAGGATTGTTTTCAACAAGTTTCAGTCTGTTGTCTCATTTCTGCCAACAATATCCACTGTGTTATCTCCTGAGATTGTGGAGAGGGAGTCTGAAGCTGGGGGAAAGCTTGGGGAACTAGATTCTTATGAGATTGAAGGGGGTGAAACAAAATCTGAAGTACTTCAGAATCTGACTGAGTTCCAGTTTTCTTGTgTCTTGTTCAATGCCGTCATGGAGAATGCATGTAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCCAGCAGGAATGCTGGGGAGATGCTTGATCGTCTCACTCTCACCTATAACAGGACTCGTCAAGCATCAATTACAACTGAGTTGATTGAGATTATCTCTGGAGCTTCAGCACTGAAGGGTTA 968 0.4494 MAMAALRREGRRLAPLISPQPMAALRSSLIAEEQIPQGVRYISTQVVRNRMKSVKSIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFIALLGDTPSVDVKKNVIVTVSSDKGLCGGINSTSVKISKAFHKLSSGPDKETKYVVLGEKAKAQLIRDSKKDIEISITELQKNPLNYTQVAVLADDILKNVEYDALRIVFNKFQSVVSFLPTISTVLSPEIVERESEAGGKLGELDSYEIEGGETKSEVLQNLTEFQFSCVLFNAVMENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALKG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00548 322 Pfam ATP synthase 45 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 PANTHER BNAA05G10580D PROTEIN 1 321 - -
Bva05g00548 322 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 43 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 320 IPR035968 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 CDD F1-ATPase_gamma 43 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 317 - -
Bva05g00548 322 Gene3D - 67 279 - -
Bva05g00548 322 PIRSF ATP_synthase_gamma 9 320 - -
Bva05g00548 322 Hamap ATP synthase gamma chain [atpG]. 41 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 PRINTS ATP synthase gamma subunit signature 298 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bva05g00548 322 ProSitePatterns ATP synthase gamma subunit signature. 306 319 IPR023632 -
Bva05g00548 322 PANTHER ATP SYNTHASE GAMMA CHAIN 1 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00548 Bva-Chr5 2706440 2711297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00548 12 321 Primary Pumps ATPases AT1G15700 29.972 4.69e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00548 K02136 - ming:122075697 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00548 05 2706440 2711297 Bva05g00548 05 2706440 2711297 ECH