Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00547 ATGGCATCGGCAAAGCGATGCCACTACGAAGTCCTAGGTCTCCAGCTCGAATGCACAGCCGATGAAATCCGATCGGCTTACAAGCGGCTTGCTCTTCAACGCCATCCTGATAAGCTCGTCCAGTCCGGCTTGTCTCAAGCTGAAGCTACAGCTCAATTCCAGGAGCTGCAACATGCCTACGAGGTCCTTTCCGACCCAAAGGAACGAGCTTGGTACGACTCTCACCGTTCTCAGATTCTCTTTTCCGATCCTAACTCGGTCGGAAACTCAGTTCCTAACTCATTCATCCCTaatctcttctccttcttttctaatACCGTTTATTCTGGGTACTCAGACTCCGGCAAGGGCTTCTATAAGGTCTTTTCTGATGTGTTTGATAAAATCCACGCCAATGAGATCAATTTCACTAAGAAATTAGGCTTAGGTGTTGATGCTGTTCGACAAGCTCCTCTCATGGGTAACTTGGAAAGTCCTTATGCCCAGGTGACAGCATTTTACAATCATTGGTTGGGTTTTTCTACGGTGATGGACTTTTGCTGGGTAGACCAGTACGACGTTATGGCTGGTCCCAACCGAAAGTCGAGGCGAGTGATGGAAGATGAAAACAAGAAGCTTAGGAAGAAGGCAAGGAAAGAATACAATGAAACGGTGCGGGGATTGGCAGAGTTTGTCAAAAAGAGGGATAAAAGGGTAATCGATATGATGATAAAGAAGAATTTGGAGACTGAGAAGAGGAAAGAGGAGGAGagggagaggaagaagaagctggagaaggagaagatggAGAGAGCAATGGCATACGAGGAGCCTGAGTGGGCTAAAGTTGAGGAGGATCGAGAAGATGAGGCATACTGGTTTGAAGAGTTAGAGcaggagaagaagaggaaggatGCTGAGAAGGAGTTGTATTGTGTAGTCTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAATCGAAGAAGCATAAAGAGAAAGTTGCTGAATTTAGGGACTCACTTGGCGATGATGAGCGATTTGAAGAGGATGTAGAGGTGGAGTTCGAAGGAGAAGGGAAGGAGATATTGGAAAGTGATGAGGAGAGAGTTGAGGTGAATGATAATCAGTCAGGCTGGACTAATAATGAGATTGATGACTTAGAGGGTAGAGTTAAAGAGTATCTCCGCACTGCAGAGGAAGATACTAGAAGAGATGGGGTTGATTTTAATAGTGATGAGAGTGGATACTTTGATTCCAACGATGCAAAGAAGGGGGAAGAGATTGGTGAGTTTGTTGGTTTTGATGATGCTGACGTGGATGTTCTTGAAGCAATGGTGGCTGGGCACAAGAGCAGAAAAAATGCTACTTCAAAGCATGAGCCCAAGGCTTCAGAGgcatcaattaaaattgataatgagAGTGGTGAGGATGGCTTTAAGGAACATGACAGACGAAAAAGCACAAGAAAGAACCGTGGAGCCAAGAAAGAGAAGGGTAGAAAAATTTGGGAGGACTCTCCGATTGGTGCTGTCAACGTTGATTATCAGAATATGAACAAGATTGAAAATGGTAATTCTCATACAGAGGAGAGTAATGGTAAAGAAAACGAGCAGATAGGTAGACATGAGAAGACTTCAAATCAACCTTATGATAAAAAAGGAACTGCAAAGGACACAAAATCCAAAGCAAAAAGTTCGtccaaaggaagaaaagctaAGgTGACATCGAAGACTCTCAGCAATGTTTGTGAGACGTGTGGAGAGGAGTTTGATTCAAGgaataaattacataaacatTTGGGTGATACTGGTCATGCTACAATAAAATATCGGTG 1826 0.4091 MASAKRCHYEVLGLQLECTADEIRSAYKRLALQRHPDKLVQSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSVPNSFIPNLFSFFSNTVYSGYSDSGKGFYKVFSDVFDKIHANEINFTKKLGLGVDAVRQAPLMGNLESPYAQVTAFYNHWLGFSTVMDFCWVDQYDVMAGPNRKSRRVMEDENKKLRKKARKEYNETVRGLAEFVKKRDKRVIDMMIKKNLETEKRKEEERERKKKLEKEKMERAMAYEEPEWAKVEEDREDEAYWFEELEQEKKRKDAEKELYCVVCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDDERFEEDVEVEFEGEGKEILESDEERVEVNDNQSGWTNNEIDDLEGRVKEYLRTAEEDTRRDGVDFNSDESGYFDSNDAKKGEEIGEFVGFDDADVDVLEAMVAGHKSRKNATSKHEPKASEASIKIDNESGEDGFKEHDRRKSTRKNRGAKKEKGRKIWEDSPIGAVNVDYQNMNKIENGNSHTEESNGKENEQIGRHEKTSNQPYDKKGTAKDTKSKAKSSSKGRKAKVTSKTLSNVCETCGEEFDSRNKLHKHLGDTGHATIKYR 608
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00547 608 SUPERFAMILY beta-beta-alpha zinc fingers 298 338 IPR036236 -
Bva05g00547 608 Coils Coil 233 265 - -
Bva05g00547 608 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Bva05g00547 608 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Bva05g00547 608 Coils Coil 196 216 - -
Bva05g00547 608 MobiDBLite consensus disorder prediction 509 523 - -
Bva05g00547 608 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Bva05g00547 608 CDD DnaJ 7 65 IPR001623 -
Bva05g00547 608 MobiDBLite consensus disorder prediction 345 381 - -
Bva05g00547 608 SMART c2h2final6 578 602 IPR013087 -
Bva05g00547 608 SMART c2h2final6 303 327 IPR013087 -
Bva05g00547 608 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 608 IPR044648 -
Bva05g00547 608 ProSiteProfiles Zinc finger C2H2 type domain profile. 578 607 IPR013087 -
Bva05g00547 608 MobiDBLite consensus disorder prediction 395 419 - -
Bva05g00547 608 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Bva05g00547 608 Gene3D Classic Zinc Finger 291 351 - -
Bva05g00547 608 PRINTS DnaJ domain signature 48 68 IPR001623 -
Bva05g00547 608 PRINTS DnaJ domain signature 27 42 IPR001623 -
Bva05g00547 608 PRINTS DnaJ domain signature 9 27 IPR001623 -
Bva05g00547 608 SUPERFAMILY Chaperone J-domain 4 95 IPR036869 -
Bva05g00547 608 Pfam DnaJ domain 8 73 IPR001623 -
Bva05g00547 608 SMART dnaj_3 6 68 IPR001623 -
Bva05g00547 608 Coils Coil 381 401 - -
Bva05g00547 608 MobiDBLite consensus disorder prediction 445 575 - -
Bva05g00547 608 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Bva05g00547 608 MobiDBLite consensus disorder prediction 524 562 - -
Bva05g00547 608 MobiDBLite consensus disorder prediction 445 481 - -
Bva05g00547 608 Gene3D DnaJ domain 1 87 IPR036869 -
Bva05g00547 608 ProSitePatterns Zinc finger C2H2 type domain signature. 580 602 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva05g00547 Bva-Chr5 2702940 2705561 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00547 3 608 C2H2 Transcription Factor Family AT1G74250 52.301 0.0 538
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva05g00547 DnaJ 2.6e-20 CL0392
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00547 K09506 - gmx:100788305 754.977