Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00527 ATGGAAGAAGATCAAGAATTCAAACACGTATGCAAGTTCTGCAGCAAGAGTTTCCCCTGTGGAAGATCCTTGGGAGGTCATATGAGGTCTCATGTCACAAATAATTCAGCTGAAACAGAAGAAAAGCTACTCACGAAGAAGCTTTCGTCTCTCAAAAATACTGGAAGCAACACTGCTAAGGGTGGAGAAACAGGTTCGGATGCAGGAACTAACGCTGGGTATGATCTCAGGGAGAACCGTAAGAGGACTTGGAGAGTTGCAGATTCAAGTGAAGACACTTCACTACTGGACAAGTTCTGCAAAGAGTGTGGGAAAGGGTTTCAATCTTGGAAAGCTCTCTTTGGTCACATGAAATGCCACTCAGAGAAGGAACGAGTTTCCAACAGCGTGGAGGATCAAGATTCAGGGACTAACGCTACCCAGAAGCTGGTCATGGATAGCCAATCTGACAATGAAGCCACGGTACCGAATCGAAGAAGAAGATCCAAGAGAAGAACAAGGTACATGGCTGCTGCTCCTGCTGCTGCAACTtcgtctttttcttttgccaatccttcctcttctttttctgagGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGTTTGATAATGCTTAGTAGAGATATGGGTCCTTGGGGTGGTCGCAATTCTGTTGCAGAGTCCTCTGACAACAACTCTGCCTACTTGGAAACTCGATCTTCACTTCGAACCAATCTGGTTAGAAAAATTGAGGGTAAGAGACCGATTTCCAATTCTTCTGAGAAAGTAAAATTGACCGAACAAAGTGAAAAGTCGGAGATTGGTAAGTTAGAACCTGCAAATCCCAGCCCTAGCGGGAAAAAATCTGAGCTTTCAAGGAAAAATAGGTCTAAGATGAACAAAGCCAAGGTTTCCATCGACGGTTTCATGAAGACTGAGAAAGCTATGAAGTCCGAACCTGATTATCAGTCAGCATTGGAAGACTCTGCAGATGAACTAGGGGAGCACATGGTCAATGAAACAGAGTTGGATTTATCGAAGTCGGGTACTACTAAAAACTATAGttcaatcaaaagaaagttATGTGGTTTTGAATCAAAGTCAAGTTGCTTGAAGAACATGGTAAATAAGGATTCAGAAGCAGAAGCTGATTTGAGCAGAAACTCTGATAAGAGAGGCAAGTTCGAGTGTACTACTTGCAACAAGATCTTTCACTCCTACCAAGCTCTTGGAGGTCACAGAGCTAGTCATAGAAAAATCAGAGGCTGCTTTGCTTCAAGAGATGAGAGCAGTGAAAATAGCATTGAGACTGATGTCTCCCCTGACCCAACAACTGAAAGCAAACTCATGAAGAACAGTGATACTGAAGATTTGATTAAACATGAATTGGGTGCTGCGCCTTTTGGTGAAGCAGACACAGTTACAGAGTCTAAGAAGAGCAAAGTCCATGAGTGCCCAATTTGTCTGAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGCCACAAGAGATCCCATTTAGCTAGTGGGTCTGAGAATAGAAACTGTCAAACACTTGTGCTTCAGGAACCAGTTCCAGAAATTAGGGATTTTCTTGATCTTAATCTTCCAGCTGCTACAGAGGAAGAAAGCACTGGCCATGTTGAGACTTACAGAACCTGGTGGGCAGGAGGCAACCACAAGCACGAGGCACTGGTAGACTTGGGTGTCTA 1691 0.4264 MEEDQEFKHVCKFCSKSFPCGRSLGGHMRSHVTNNSAETEEKLLTKKLSSLKNTGSNTAKGGETGSDAGTNAGYDLRENRKRTWRVADSSEDTSLLDKFCKECGKGFQSWKALFGHMKCHSEKERVSNSVEDQDSGTNATQKLVMDSQSDNEATVPNRRRRSKRRTRYMAAAPAAATSSFSFANPSSSFSEVEQEQEEVAMSLIMLSRDMGPWGGRNSVAESSDNNSAYLETRSSLRTNLVRKIEGKRPISNSSEKVKLTEQSEKSEIGKLEPANPSPSGKKSELSRKNRSKMNKAKVSIDGFMKTEKAMKSEPDYQSALEDSADELGEHMVNETELDLSKSGTTKNYSSIKRKLCGFESKSSCLKNMVNKDSEAEADLSRNSDKRGKFECTTCNKIFHSYQALGGHRASHRKIRGCFASRDESSENSIETDVSPDPTTESKLMKNSDTEDLIKHELGAAPFGEADTVTESKKSKVHECPICLKVFPSGQALGGHKRSHLASGSENRNCQTLVLQEPVPEIRDFLDLNLPAATEEESTGHVETYRTWWAGGNHKHEALVDLGV 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00527 563 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Bva05g00527 563 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 561 - -
Bva05g00527 563 SUPERFAMILY beta-beta-alpha zinc fingers 9 120 IPR036236 -
Bva05g00527 563 ProSitePatterns Zinc finger C2H2 type domain signature. 391 411 IPR013087 -
Bva05g00527 563 SUPERFAMILY beta-beta-alpha zinc fingers 389 499 IPR036236 -
Bva05g00527 563 MobiDBLite consensus disorder prediction 245 268 - -
Bva05g00527 563 ProSitePatterns Zinc finger C2H2 type domain signature. 479 499 IPR013087 -
Bva05g00527 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 477 504 IPR013087 -
Bva05g00527 563 MobiDBLite consensus disorder prediction 245 297 - -
Bva05g00527 563 SMART c2h2final6 9 31 IPR013087 -
Bva05g00527 563 SMART c2h2final6 389 411 IPR013087 -
Bva05g00527 563 SMART c2h2final6 98 120 IPR013087 -
Bva05g00527 563 SMART c2h2final6 477 499 IPR013087 -
Bva05g00527 563 MobiDBLite consensus disorder prediction 48 65 - -
Bva05g00527 563 MobiDBLite consensus disorder prediction 216 235 - -
Bva05g00527 563 Pfam C2H2-type zinc finger 389 413 - -
Bva05g00527 563 Pfam C2H2-type zinc finger 9 31 - -
Bva05g00527 563 Pfam C2H2-type zinc finger 100 122 - -
Bva05g00527 563 Pfam C2H2-type zinc finger 476 501 - -
Bva05g00527 563 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Bva05g00527 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Bva05g00527 563 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 561 - -
Bva05g00527 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Bva05g00527 563 MobiDBLite consensus disorder prediction 48 74 - -
Bva05g00527 563 MobiDBLite consensus disorder prediction 283 297 - -
Bva05g00527 563 Gene3D Classic Zinc Finger 386 499 - -
Bva05g00527 563 MobiDBLite consensus disorder prediction 131 152 - -
Bva05g00527 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 389 416 IPR013087 -
Bva05g00527 563 MobiDBLite consensus disorder prediction 177 195 - -
Bva05g00527 563 MobiDBLite consensus disorder prediction 125 195 - -
Bva05g00527 563 Coils Coil 34 54 - -
Bva05g00527 563 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00527 Bva-Chr5 2591715 2594295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00527 423 535 C2H2 Transcription Factor Family AT1G26610 44.737 1.54e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva05g00527 zf-C2H2_6 6.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00527 - - gmx:102669916 626.32