Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00521 ATGAAACTCACCGAAGAACAGAGAAAACAAATCGAAACGAACCGTTTAGCAGCGATCGCAAAACGAAAGGCTCTGTTAGAATCTCGCGCAGAGTCTCATCAACAGGAACACCCGTGGGAACTCGTCAAGTGCCGTAAGTTGTCTCACGACGAACTCAATCCCAGATCTATTCACCTCCCAAAAGAACCCCAAATCATCTCGGCCAGACAAGTTCCCCCAAAACCGTTGCCTAATAAATTCCGATTCCTGGTTCGGCTTGAAATATGCTCTCCCGATTCTTTCTCTGCAACGCCGTTGCGCCTTCAAGGTGTTCCCTATCCGGGAGAGGAGCCGTGCTTGAAGAGACTAAGCGACTCCTTGTCAGATgtaatgccatcacaCTACACTCAAAATAATGCTGGTAGGAAGGCCTCTGTATATAAGCTAAGGGACTACCATGCTGTTCTAAAATGTTTGAAGGCTTCCTCGGAGATTGAGGTTGAAGAAATAACATGGGGAACTTTCAATGTTGTCGAGAGGCTTTCACATTCTTTTGTTGCAGAGCGCTGGATACCATGCAGACCCGAACACTTGTCTGATGACGTCGTTGATGAATTAATTGAGAATCTGCCAAGAGTTTTGTTGGATGCATTGTTGCCTTTTCAGTTAGATGGTTTAAGATTTGGTTTGAGAAGAGGCGGCAGGTGTCTTATAGCAGATGAAATGGGTTTGGGAAAAACACTTCAGgcTATTGCTATTGCAGGATGTTTCATGAATGAAGGTTCTATACTTGTTGTTTGCCCAGCTGTTATGCGTTTTACATGGGCAGAAGAATTGGAGCGTTGGCTTCCCTTCTGTTTGCCTGCTGATATACATCTGGTTTTTGGCCATAGAGATAACCCTGCATATTTGACAAGATGTCCTAGAGTTGTTGTTATTTCTTATACCATGCTTCATCATCTACGAAAGAGCATGCTCGAGCGAGAGTGGGCTATCTTGATTGTTGATGAATCTCATCATGTGCGATGCACAAAAAAAGCCTCAGAAACTGGAGAGATAAAGGCTGTCCTTGATGCGGCCTCAAAGGTCAAGCGCATAATTCTGCTATCTGGGACACCCTCTTTGTCAAGGCCGTTTGACATTTTTCATCAGATAAATATCTTATGGCCTGGGTTGCTTGGGAAGAGTAAATATGATTTTGCGAAACTTTACTGCGATTTCAAAGTTCTCCGGGGTATTCAAGGGAAATATTTTCAGGATTTCTCAAAGGGCATTCGTCTGGAGGAGTTGAATGTATTACTAAAGCAAACTGTAATGATAAGGCGTTTAAAGGAGCATGTGCTGCTCCAGTTACCACCGAAACGCCGGCAAATTATAAGGCTGTCGTTGAAGAGATCAGATATAGTCGCTGCAAAAACTGCAGTAGGGGTGTTAAGTAACAATACTTCTGAAAGTGCCTCTGAGGATGCGACTTCGGAAAATTTAGATGAACCTGATGGAAAGCTATCCCTCCAGGAACTTGGAATTGCAAAGCTTTCTGGGCTTCGTGAATGGCTTTCCATCCATCCCCTCATTGCGGAGCCAGACAGCGCttcaaaaatgataatttttgcTCATCACCACAAAGTTCTTGATGGAATACAGGAGTTTATATGTGAGAAAGGGATCAGCTTTGTTCGTATCGATGGAAATACACCGGCCAAAGATAGGCAGTTAGCTGTAGGGTCATTTCGATCATCACCAGAGgtTAGAATTGCTATAGTAGGTATTCTAGCAGCAGGATATGGAGTTGATTTCTCGTCAGCACAAAATGTTGTCTTTTTGGAGCTACCTCAATGCCCAAATATGATGCTTCAGGCGGAGGATAGAGCTCACCGGCGGGGGCAAACAAATGCAGTGAATGTATACATCTTCTCTGCGAAGGATACTGTGGATGAGTCCCATTGgagaaatttaaacaaaagttTGTATCGTATTTCGACTACGACGGATGGCAAATATGACGCAATGAAAGAAATTGCGGTTGAAGGTGTTTCATATTTAGGAACATCGGTTAAAACGGATGTTAGTTATAGAGATCAATCTGCAGCCGGAACTGCGTGTACTGAAACATCCGAACAGGTCATCGAGTTTCCGGATGCGTGCTCAGTTTTGGATTTGGAACCTCCCCAAAAAAATTGTCGTAAATCAGCAACTGAATCAAGTGGTAAATCTGATATAGGGTTCGGGAATAATTCTACTCAGACATCTCATGTTATGACTGATACAGTTTCCGGCCTAGAATCAGGTAAAGTTTCGGATCCGGATGGAAATTTAGACATAGATGGCTCTCATACTGAGGAAGGAGGGTTTTATGCTCATAAGATGGATAAGAGTGGTGCAGAGAAAGATCAAGTGGTAGATTTTGTTGAAGAGGAGACCCACAAAGGCAAAGAGCAAATGATAGAGGACAAGAGACCCTCAAAAGAAGCACATGACAACCTACCTTTGCAACCAATTGCTGCTGATAATAGTTCTTCTGATCAAATTGATGCTTTGAGATTTGAGGTGAGTCCATACACTGGAAGGATCCACTTGTATAGTTGCATCTCGGGTACGGATACAAGGCCAAGGCCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGCTGCTAGGTTCCCTTTTTGATGATGATAGAAACAAAGTAGACTTTAGATCTGTGAATCACAACCCTGCTTGCAGGCATGCTCTTGTGGAATTTATAAATGAGTGGAAAAAATTGAGGCCTATTGAGCGTAAGAAGTTACAAGGGAAACCGTTGCAGCTTCCCTTGGCTGTTGAATTGAGCTACTTGAGTGAAAGCATTAACCACAACAACCGGGGATTATTAAATGGTGGAAGCAACCGACGCACGACACCTTTAGTGGAGATTAGCCATCCTCTACCATCAGATGCTCTTTGGAGAAAAGTTTATCTGCGAAGTGGGCATGgtaagaaggagaaagaataCGCTCAGGGTTGGAGTCTGGCAGAAGAACCGCTGTGCAAGCTCTGTCAAAAACCATGCATGGGGAACAATGCCAAGACGCCTGAATATTTTGAAGATCTTTTCTGCAACCTTGGTTGCTATGAAGAGTACCGCATAAGAACTAGCAATAGATTCCTCCGTCAGGAACTTTTCCAAATTGAACGAGGCGTGTGCTCAAATTGCCAATTAGACTGTCATAAGCTTGTTGAGCATATAAGGCCTTTGTCGTTGGAAATGCGAAGAGAGTATATAGAGAAAGTAGCACCAAAAGTGGCAAAGCGGAAGAACATGCTTGAGAAGCTTGTCAACGATCCAACTGAAGGTGATGCATGGCACGCAGATCACATAATTCCAGTATATGATGGCGGagGTGAATGTAGATTGGAGAATATGAGGACTCTTTGTGTGGCCTGCCATTACGACGTTACTGCAGCACAATGTGCTGAACGACGCAGGAAAAGGGCCGAGGCCAAGAAACtactaaaaaatatcatgaGTAACCTGAAAAATGGTCAGATGGTGGATGCCACAGACTCTCGTATTAAGGACCATGGGCTTCTTGAGGCACAAAGAAATGTACTCGAGGATGAGCTTATAATCAAGGTGCCTGGTAGTGCTTATTCTGAAAATCAAAGCTG 3626 0.428 MKLTEEQRKQIETNRLAAIAKRKALLESRAESHQQEHPWELVKCRKLSHDELNPRSIHLPKEPQIISARQVPPKPLPNKFRFLVRLEICSPDSFSATPLRLQGVPYPGEEPCLKRLSDSLSDVMPSHYTQNNAGRKASVYKLRDYHAVLKCLKASSEIEVEEITWGTFNVVERLSHSFVAERWIPCRPEHLSDDVVDELIENLPRVLLDALLPFQLDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFMNEGSILVVCPAVMRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRVVVISYTMLHHLRKSMLEREWAILIVDESHHVRCTKKASETGEIKAVLDAASKVKRIILLSGTPSLSRPFDIFHQINILWPGLLGKSKYDFAKLYCDFKVLRGIQGKYFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLSLKRSDIVAAKTAVGVLSNNTSESASEDATSENLDEPDGKLSLQELGIAKLSGLREWLSIHPLIAEPDSASKMIIFAHHHKVLDGIQEFICEKGISFVRIDGNTPAKDRQLAVGSFRSSPEVRIAIVGILAAGYGVDFSSAQNVVFLELPQCPNMMLQAEDRAHRRGQTNAVNVYIFSAKDTVDESHWRNLNKSLYRISTTTDGKYDAMKEIAVEGVSYLGTSVKTDVSYRDQSAAGTACTETSEQVIEFPDACSVLDLEPPQKNCRKSATESSGKSDIGFGNNSTQTSHVMTDTVSGLESGKVSDPDGNLDIDGSHTEEGGFYAHKMDKSGAEKDQVVDFVEEETHKGKEQMIEDKRPSKEAHDNLPLQPIAADNSSSDQIDALRFEVSPYTGRIHLYSCISGTDTRPRPLYENFRPEELELLGSLFDDDRNKVDFRSVNHNPACRHALVEFINEWKKLRPIERKKLQGKPLQLPLAVELSYLSESINHNNRGLLNGGSNRRTTPLVEISHPLPSDALWRKVYLRSGHGKKEKEYAQGWSLAEEPLCKLCQKPCMGNNAKTPEYFEDLFCNLGCYEEYRIRTSNRFLRQELFQIERGVCSNCQLDCHKLVEHIRPLSLEMRREYIEKVAPKVAKRKNMLEKLVNDPTEGDAWHADHIIPVYDGGGECRLENMRTLCVACHYDVTAAQCAERRRKRAEAKKLLKNIMSNLKNGQMVDATDSRIKDHGLLEAQRNVLEDELIIKVPGSAYSENQS 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00521 1208 CDD SF2_C_SNF 503 631 - -
Bva05g00521 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 672 IPR027417 -
Bva05g00521 1208 MobiDBLite consensus disorder prediction 717 776 - -
Bva05g00521 1208 SMART ultradead3 207 397 IPR014001 -
Bva05g00521 1208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 513 667 IPR001650 -
Bva05g00521 1208 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1161 - -
Bva05g00521 1208 MobiDBLite consensus disorder prediction 720 754 - -
Bva05g00521 1208 Pfam Helicase conserved C-terminal domain 521 621 IPR001650 -
Bva05g00521 1208 Gene3D - 191 428 IPR038718 -
Bva05g00521 1208 Coils Coil 16 36 - -
Bva05g00521 1208 Pfam HNH endonuclease 1105 1136 IPR002711 GO:0003676|GO:0004519
Bva05g00521 1208 Pfam SNF2-related domain 229 463 IPR000330 GO:0005524|GO:0140658
Bva05g00521 1208 CDD HNHc 1099 1139 IPR003615 -
Bva05g00521 1208 Gene3D - 502 689 IPR027417 -
Bva05g00521 1208 SMART HNH_5 1082 1136 IPR003615 -
Bva05g00521 1208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 384 IPR014001 -
Bva05g00521 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 435 IPR027417 -
Bva05g00521 1208 SMART helicmild6 538 621 IPR001650 -
Bva05g00521 1208 MobiDBLite consensus disorder prediction 800 818 - -
Bva05g00521 1208 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1161 - -
Bva05g00521 1208 MobiDBLite consensus disorder prediction 800 820 - -
Bva05g00521 1208 Gene3D - 1030 1163 - -
Bva05g00521 1208 CDD DEXHc_HARP_SMARCAL1 211 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00521 Bva-Chr5 2561241 2571759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00521 523 639 RAD5 or RAD16-like Gene Family AT1G11100 36.752 4.86e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva05g00521 SNF2_N 2.1e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00521 K25861 - gmx:100788690 1558.5