Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00508 ATGGCGGGGGAATCGTTTTCGTCTTCGTCTTCGTCTTCGCCTGTCTTGTCCATGGATGTTCTCGGCGATATTGAGGACTACGTTTGGCCAAATCAAGCAGAAGGTTCATTGCCATGGGACACATTTCATCACGTTTTTGAACTTGTGCAGAATGGGAATGATGCATTTCGAGAGAACCGTATGCAAGAGGCAATAAACTTTTACTCCAGAGCAAATAACATCAGAACTGGTGATCCAGTTATCCTCAGCAATCGATGTGCAGCTTATATTAGGATTAGCCAATTCTTGAAGGACAGATCTCCATCAGCTTCAGAATATGATCCTTTGAGTGGGCTTGATCCTACTACACACGCTGAACTTGGCTTGAAGGATGCGGAGAAGCTTGTTGACATCCGAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGctctttttttgTTGGAGAAATATGAAAAGGCCCGAGATGTTATTCTTTCTGGCCGTCAAGTTGATCCATATAGTAATTCCCTTCGGGCTTCtctaaaaaatttggaaagagCTTTAGCTAGTTTGACTGGAACCAGTACACATGGACAACCAGAGCGTACTGATGACTTTGATTGTACACTTTGCCTGAAGTTACTGTATGAACCTGTTACAACACCTTGTGGACACTCTTTTTGCCGCTCATGTCTATTTCAGTCAATGGATCGTGGTAACAGATGCCCATTGTGCCGGACGGTTCTTTTTATTAGTCCTAGATCGTGCTCCGTCAGTGTGACATTGAACAACATTATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAGGCAAGAACATGAAAGTTTGACCAACTTCGGTGTGGATTTGTTGCCACTTTTTGTCATGGATGTTATCGTCCCATGTCAAAAGCTTCCACTCCATATATTTGAACCTCGGTACAGACTTATGgTCAGAAGAATAATGGAAGGAAATCATCGTATGGGAATGGTGATAATTGATTCTACAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCCAGATGGACGTTTCTATATAGAGGTTGAAAGTCGCCGGAGGTTTCGCATAATCAGATCTTGGGATCAGGATGGATATCGTGTTGCAGAGGTCGAATGGATACAGGATATTATGCAATCAGAAGGGACAAGTGAGAGGGAAGATTTGCAGGAATTGACATATAATGCAGCAGAATATGCTCGATCATGGATAACAAGGGCTAGAGAAGCTGCAAGACAAGATCAAAGAAGACTCGAGAAACTCCTAAATGTTGAAGCAATGATGCCCCCAACACGAGACCCTGAGCGCTTCAGTTTTTGGCTCACTACGTTATCAAACCGGAGGCCTTCTGAAAAATTGGATCTTTTACGCATTAGAGATACCAAAGAGAGGATTAGACGTGGCTTGATATATCTCCGAGCAGACGAACAGGGCTGCCGGATTCAGTA 1481 0.424 MAGESFSSSSSSSPVLSMDVLGDIEDYVWPNQAEGSLPWDTFHHVFELVQNGNDAFRENRMQEAINFYSRANNIRTGDPVILSNRCAAYIRISQFLKDRSPSASEYDPLSGLDPTTHAELGLKDAEKLVDIRSNSVKSYLLKANALFLLEKYEKARDVILSGRQVDPYSNSLRASLKNLERALASLTGTSTHGQPERTDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRSCSVSVTLNNIIQKNFPEEYAERRQEHESLTNFGVDLLPLFVMDVIVPCQKLPLHIFEPRYRLMVRRIMEGNHRMGMVIIDSTTGSLAEFACEVEITECEPLPDGRFYIEVESRRRFRIIRSWDQDGYRVAEVEWIQDIMQSEGTSEREDLQELTYNAAEYARSWITRAREAARQDQRRLEKLLNVEAMMPPTRDPERFSFWLTTLSNRRPSEKLDLLRIRDTKERIRRGLIYLRADEQGCRIQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00508 493 ProSiteProfiles Lon N-terminal domain profile. 284 485 IPR003111 -
Bva05g00508 493 Coils Coil 415 435 - -
Bva05g00508 493 SUPERFAMILY PUA domain-like 287 483 IPR015947 -
Bva05g00508 493 SMART lon_5 286 485 IPR003111 -
Bva05g00508 493 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Bva05g00508 493 SUPERFAMILY RING/U-box 197 266 - -
Bva05g00508 493 PANTHER RING FINGER PROTEIN 127 11 486 - -
Bva05g00508 493 SUPERFAMILY TPR-like 47 179 IPR011990 GO:0005515
Bva05g00508 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 282 IPR013083 -
Bva05g00508 493 Gene3D - 285 387 IPR046336 -
Bva05g00508 493 SMART ring_2 203 240 IPR001841 -
Bva05g00508 493 Pfam ATP-dependent protease La (LON) substrate-binding domain 287 483 IPR003111 -
Bva05g00508 493 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Bva05g00508 493 Pfam Zinc finger, C3HC4 type (RING finger) 203 240 - -
Bva05g00508 493 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 11 486 - -
Bva05g00508 493 Coils Coil 169 189 - -
Bva05g00508 493 Gene3D Tetratricopeptide repeat domain 43 193 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00508 Bva-Chr5 2477671 2484876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00508 189 244 C3H Transcription Factor Family AT1G74990 35.593 8.14e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00508 - - jre:109013310 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00508 05 2477671 2484876 Bva05g00508 05 2477671 2484876 ECH