Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00501 ATGGAAACTGCAGAATTTGAAGGAATTCCCAGATTTCGCTCCGTTTCAAAGCTGATTCTTTGCGCCCTTTCTGGAGCTCTTACGGGTTGTTTTGCTATTGCTGGAGCCTTCACAGGAGCTATTGCTGGTGCTTTAGCAGGTAGGGCTTCTGAGAGTGGTTTTCTCCGAGGAGCTTCATTGGGTGCCATTGCCGGTGCCATTCTCTCTGTTGAGGTGTTGGAAGCTTCCCGTGCCTACTGGTGTATGGAGCAAACGGGCTCCCGGGGCTCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTGGAGGAACCATTTACACCAGCTATGTTAACAGCTTATAGTTGGCAGATGCAGCAGGTTGACATTGCTAATATAAGCTATGATGACATTCATGACGCTCATAGCTTAGTTGCATCGAGAGGATTGTCAGGGGAATCGTTGAAGAAGCTACCACACCATGTGatcttgaaagaaatgaaggcAGAGAACAGTATCTGTTGTACAATATGTTTGCAGGATATTGAAGTAGGAGAAATTGCAAGGAGCTTACCTCGTTGTCACCATACGTTTCACATGATGTGTGTGGACAAGTGGCTTATCAAGAATGATTCATGTCCTATATGTAGACGACAAGttta 653 0.4456 METAEFEGIPRFRSVSKLILCALSGALTGCFAIAGAFTGAIAGALAGRASESGFLRGASLGAIAGAILSVEVLEASRAYWCMEQTGSRGSSSMADFIEELVRGRLVEEPFTPAMLTAYSWQMQQVDIANISYDDIHDAHSLVASRGLSGESLKKLPHHVILKEMKAENSICCTICLQDIEVGEIARSLPRCHHTFHMMCVDKWLIKNDSCPICRRQV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00501 217 SUPERFAMILY RING/U-box 159 217 - -
Bva05g00501 217 SMART ring_2 172 213 IPR001841 -
Bva05g00501 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 217 IPR013083 -
Bva05g00501 217 Pfam Ring finger domain 172 214 IPR001841 -
Bva05g00501 217 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Bva05g00501 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 216 - -
Bva05g00501 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 216 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00501 Bva-Chr5 2450071 2453187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00501 14 217 C3H Transcription Factor Family AT1G74410 59.804 7.79e-81 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00501 - - gmx:100800105 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00501 05 2450071 2453187 Bva05g00501 05 2450071 2453187 ECH