Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00490 ATGGGAAGAGTTAAgctgaagataaaaaaattagagagcACAAGCAATCGACAAGTGACTTATTCGAAAAGGAGAAATGGAATATTAAAGAAAGCGAAGGAATTATCTATATTATGTGATATAGATATTGCCCTTCTTATGTTTTCTCCGACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGcaATGTTGAGGAGGTGCTTGGAAGATTTGCTCAACTGAGCCCCCAAGAAAGAGCGAAAAGGAAACTGGAAAGCCTTGAAGCTCTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAACAGTCAAACGGTGGAGGAATTAAGTCATCAAGTGAGGGTGCTACAAGCTCATCTTACAGAAGTACATCAGAGACTGAGCAATTGGAGTAATCCAGAGAAGATCGATAACTTGGAACATCTTAGGCAAATGGAAGATTCGCTAAGGGAATCAATCAATCGAGTACATCTACAGAAGGAAATTCTGGGTAAACAACAACTAATGTCACTTGAATGCTCAAACCAGTTACAGGATGGCATGACTTTACCCTTGATGATGACTGGTCTGCAAGAATCCCAACCTCTCTCTTGGCTCTTGAATAATGATAATCATCATTTGATGTTACCCAGTGACACAAAGTTTCTGCAATTTAGCGACAATCCTAAAAGAGAAGCTGAGTGCTCCACTGATGTATCACTGCCAAGTTATTCTGGTTATATTGGCAGTAGCAAACAACTTGACGTTGGTAGTTCGCCCCAAGTTGCTACTTTGGCTCAGGGTGGATCTGCCTTGCATGAGTTAAATGGAACTGCTTGCTTAAACGTACAGGAAAGCGAGCAGTTTGCATATCCTCCACCAGATAATGAGAAAGTGAAGCCTCACCCAGCAATGAATGATAAGCCCAATCCTGTGGATTATCAAGCTAATGGCAGCTTTGATTTGCCTTGGTCATTGTTTGAAACTGGACATCAGTTCTGGAATCCTCCATGTGGCATCGCTATGTACAATGAGAACGGTTACAACCGGTA 1055 0.4038 MGRVKLKIKKLESTSNRQVTYSKRRNGILKKAKELSILCDIDIALLMFSPTGKPTLLQGERSNVEEVLGRFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSNSQTVEELSHQVRVLQAHLTEVHQRLSNWSNPEKIDNLEHLRQMEDSLRESINRVHLQKEILGKQQLMSLECSNQDGMTLPLMMTGLQESQPLSWLLNNDNHHLMLPSDTKFLQFSDNPKREAECSTDVSLPSYSGYIGSSKQLDVGSSPQVATLAQGGSALHELNGTACLNVQESEQFAYPPPDNEKVKPHPAMNDKPNPVDYQANGSFDLPWSLFETGHQFWNPPCGIAMYNENGYNR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00490 349 Coils Coil 77 97 - -
Bva05g00490 349 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva05g00490 349 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva05g00490 349 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva05g00490 349 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva05g00490 349 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bva05g00490 349 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bva05g00490 349 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 348 - -
Bva05g00490 349 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 348 - -
Bva05g00490 349 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Bva05g00490 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00490 Bva-Chr5 2402942 2407556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00490 1 275 Type I MADS-box Gene Family AT2G03060 51.049 2.46e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva05g00490 SRF-TF 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00490 - - lang:109362237 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00490 05 2402942 2407556 Bva05g00490 05 2402942 2407556 ECH