Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00477 ATGAAGAAGCGACAGGTAGTGGTGAAAAGAGATGTTTCCAACACTTCATCCTCAGTGGTGAGAAATATTCGATACGGTGAGTGTCAAAAGAATCATGCGGCTAATATTGGAGGGTATGCTGTGGATGGATGCAGAGAGTTTATGGCCAGTGGTGGAGAGGGGACAAGTGGGGCGCTTACATGTGCAGCTTGTGGCTGCCACAGGAATTTTCACCGAAGGGAAGTGCAAACTGAAGTTGTCTGTGAGTACTCTCCTCCTGATTCAGCTCGTTG 272 0.4816 MKKRQVVVKRDVSNTSSSVVRNIRYGECQKNHAANIGGYAVDGCREFMASGGEGTSGALTCAACGCHRNFHRREVQTEVVCEYSPPDSAR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00477 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Bva05g00477 90 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Bva05g00477 90 PANTHER MINI ZINC FINGER PROTEIN 3 3 86 - -
Bva05g00477 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 86 - -
Bva05g00477 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00477 Bva-Chr5 2358107 2358379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00477 1 88 Zinc finger-homeobox gene family AT1G18835 77.528 1.40e-42 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva05g00477 ZF-HD_dimer 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00477 - - gmx:100785967 167.548