Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00476 ATGGGAAGACCACCTTGCTGTGACAGAGTCGGAGTGAAGAAAGGGCCTTGGACTCCCGAGGAGGACATCATCTTGGTCTCTTACATTCAAGAACACGGACCTGGCAATTGGAGATCAGTTCCAACCAATACAGGTTTGCTTAGATGCAGTAAAAGCTGCAGACTTAGATGGACAAACTACCTTAGGCCTGGCATCAAACGAGGTAATTTCACCCATCACGAGGAAAAGATGATAATTCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCCATTGCTTCCTATCTTCCGCAGAGGACAGACAATGACATAAAGAATTACTGGAACACCCatttgaagaagaagctgaaaaCGCTTCAAACAGGGAGCTGTGACGGTCATGAACAAGCTGATGGATACTCGTGTTCACAGCCAAAGGGTCAGTGGGAGAGAAGGCTTCAAACTGATATCCACATGGCCAAACAAGCCTTGTGTGAGGCTCTCTCCCTTGACAAGCCAGCTTCAACCCATTTCCCAAttgatcataaaaataatttatctcttGAGaccaattataataataatgatgatgatgatgatgataagcCAAACCAGCAAGGAATAGGAATATCATCCTCTAATTATGCATCCAGCGCAGACAACATAGCCCGTTTGCTCGAGAACTGGACGAAGCAAACACCAGAGAATGCTCAAAGAGCCCATTCAGgggctttttctttcttcaacaaTGCCAACGACCTCAACGTGGCGACTACTCCTGCTACTACCAGAGGAGCTGGTTCAAGTTACAGTGATGGTGCACAGAGTGGCAGTGCCACCACAACCCCAGATGCTCTTGATTCGCTATTGAGCTTTAACTCTTCCAAGTCCGACGCCTCTGACAACAGTGCCAATTTGACAACAGAGATTGGGCTTCTCCAAGATGAGAGCAAGCCAAATTTGGAAGATGCAGCTGGACAAGTCCCTCTCACGCTGCTGGAGAAATGGCTACTCGATGATGCCGCAGCTCAAGGCCACGAAGATCTAATCAACATGTCAGTCGATGAAACTACATCAAccttgtttaatta 1070 0.4327 MGRPPCCDRVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTHHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKTLQTGSCDGHEQADGYSCSQPKGQWERRLQTDIHMAKQALCEALSLDKPASTHFPIDHKNNLSLETNYNNNDDDDDDKPNQQGIGISSSNYASSADNIARLLENWTKQTPENAQRAHSGAFSFFNNANDLNVATTPATTRGAGSSYSDGAQSGSATTTPDALDSLLSFNSSKSDASDNSANLTTEIGLLQDESKPNLEDAAGQVPLTLLEKWLLDDAAAQGHEDLINMSVDETTSTLFN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00476 356 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 341 - -
Bva05g00476 356 CDD SANT 69 112 IPR001005 -
Bva05g00476 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva05g00476 356 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva05g00476 356 CDD SANT 16 61 IPR001005 -
Bva05g00476 356 MobiDBLite consensus disorder prediction 251 275 - -
Bva05g00476 356 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva05g00476 356 MobiDBLite consensus disorder prediction 171 207 - -
Bva05g00476 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva05g00476 356 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva05g00476 356 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva05g00476 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 341 - -
Bva05g00476 356 SMART sant 66 114 IPR001005 -
Bva05g00476 356 SMART sant 13 63 IPR001005 -
Bva05g00476 356 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva05g00476 356 Gene3D - 68 132 - -
Bva05g00476 356 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00476 Bva-Chr5 2347612 2349514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00476 1 347 MYB Transcription Factor Family AT5G62470 49.870 1.18e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g00476 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00476 K09422 - qsu:111987893 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00476 05 2347612 2349514 Bva05g00476 05 2347612 2349514 ECH