Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00459 ATGTCTAGTAGAAGGTCGCGTTCAAGACAATCGGGTGGTTCCAGGAATATCACCGATGATCAGATCAATGATCTTGTCACTAAATTGCAACAGCTTCTTCCCGAGCTTCGCAATAGCCGCTCCGACAAGGTTTCGGCTGCCAAGGTGTTACAGGAGACGTGCAACTACATTAGAAACTTGCACAGGGAAGTTGATGACCTAAGCGAACGCTTATCGGAGCTGTTGGCAACGAGTGACACTGCCCAAGCTGCAATTATTAGAAGTTTACTCATGTG 275 0.4727 MSSRRSRSRQSGGSRNITDDQINDLVTKLQQLLPELRNSRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLM 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00459 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Bva05g00459 91 Gene3D - 3 88 IPR036638 GO:0046983
Bva05g00459 91 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g00459 91 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Bva05g00459 91 CDD bHLH_AtPRE_like 17 77 - -
Bva05g00459 91 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Bva05g00459 91 Coils Coil 57 84 - -
Bva05g00459 91 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Bva05g00459 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00459 Bva-Chr5 2264609 2264994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00459 17 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 86.667 1.42e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g00459 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00459 - - csv:101219790 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01242 06 9564405 9565147 Bva05g00459 05 2264609 2264994 ECH
Bva08g01465 08 7699027 7699588 Bva05g00459 05 2264609 2264994 ECH
Bva11g01014 11 11810769 11811428 Bva05g00459 05 2264609 2264994 ECH
Bva05g00459 05 2264609 2264994 Bva05g00459 05 2264609 2264994 ECH