Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00449 atGGGAGCAAACATGTTTAGGGTGCTATTCGTAtgtgtattatattttgttacatTTCCAACACTTAGAGGCAACATAGGGCATTTTGACGAATACTGGCAAAGCCGATCTGCAGATGCCCAACAGGCTGCTCGCGAGGCTTTCCACTCCAACCCTGAGTCTGTAACCCAGGATTTCCACGAGGCTGTGAAAGGTGCCAATAACACAAGGAGAGGTCTGAGGAGCAAGTACACCGGTCCATGCTCTGCCACAAACCCAATAGACAGTTGTTGGAGATGTGATCCCAACTGGGCAAACAACCGCAAGAAGCTAGCTGATTGTGTCCTTGGCTTTGGCAAAGGCACCACAGGAGGCAAAGATGGAAAGTTCTATGTGGTCACTGATCCATCTGACAGTGACTTGGTGAACCCCAAACCTGGAACATTGCGCCATGCTGTGATCCAACCCGTGCCATTATGGATCACCTTTGCTCATAGCATGAAGATCAGACTAAGTGAAGAGCTTTTAGTCACTTCCGATAAGACAATAGATGGTCGTGGTGCCAATGTTCATATCTCCGATGGTGCTCAAATTACGTTGCAGTTTGTGAAAAATGTAATCATTCATGGGCTGCACATCCATGATAACAAAAGGGGCAATGGTGGCATGATCAGAGACTCGGTGAATCACTATGGAATTCGCACGCATAGTGATGGAGATGGAATCTCATTGTTTGGAGCCACAAACGTGTGGATAGATCATATTTCTATGTGGAATTGCTATGATGGTTTAATTGATGCGGTCATGGCATCCACAGCCATTACCGTTTCCAACTGCCATTTTACCAAACATAATGAaGTAATGTTATTTGGTGCAGATGATGGATACTCTGGTGATAAAGTGACGCAAATAACTTTGGCTTTCAACCATTTTGGGAAAGGATTGGTGCAAAGGATGCCGAGGTGCAGATGGGGATTCTTTCATATTGTAAACAATGACTACACTCATTGGCTCATGTATGCAATTGGTGGTAGCAAAAAGCCCACCATCATCAGCCAGGGTAACCGATTTGTTGCTCCTCCCAACAAATATAGCAAAGAGGTGACAAAGAGGGCTTATGCAAGTGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAAGGTGACGTAATGAAGAATGGAGCCTTCTTTGTTCAGTCTGGAAAACCAATTTCACTTCCCAAGACAGAAATGAAGCCAAGGCCTGGCTCAGATGTGGGCAGTCTCACGCGTTTTTCAGGTGCTTTAAACTGTATTGCCAAAAAAGCATGTTG 1292 0.4443 MGANMFRVLFVCVLYFVTFPTLRGNIGHFDEYWQSRSADAQQAAREAFHSNPESVTQDFHEAVKGANNTRRGLRSKYTGPCSATNPIDSCWRCDPNWANNRKKLADCVLGFGKGTTGGKDGKFYVVTDPSDSDLVNPKPGTLRHAVIQPVPLWITFAHSMKIRLSEELLVTSDKTIDGRGANVHISDGAQITLQFVKNVIIHGLHIHDNKRGNGGMIRDSVNHYGIRTHSDGDGISLFGATNVWIDHISMWNCYDGLIDAVMASTAITVSNCHFTKHNEVMLFGADDGYSGDKVTQITLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAIGGSKKPTIISQGNRFVAPPNKYSKEVTKRAYASESEWKNWNWRSEGDVMKNGAFFVQSGKPISLPKTEMKPRPGSDVGSLTRFSGALNCIAKKAC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00449 430 Pfam Pectate lyase 168 350 IPR002022 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Bva05g00449 430 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Bva05g00449 430 Pfam Pectate lyase, N terminus 25 73 IPR007524 GO:0030570
Bva05g00449 430 Gene3D - 84 423 IPR012334 -
Bva05g00449 430 SUPERFAMILY Pectin lyase-like 73 423 IPR011050 -
Bva05g00449 430 PANTHER PECTATE LYASE 7 430 - -
Bva05g00449 430 PANTHER PECTATE LYASE 18-RELATED 7 430 IPR045032 GO:0030570
Bva05g00449 430 SMART amb_all 159 356 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00449 Bva-Chr5 2214896 2216747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00449 3 430 Polysaccharide Lyase AT3G01270 56.118 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00449 K01728 - zju:107415842 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01278 03 12483559 12485736 Bva05g00449 05 2214896 2216747 ECH
Bva04g01214 04 8350559 8353260 Bva05g00449 05 2214896 2216747 ECH
Bva08g01443 08 7564919 7567839 Bva05g00449 05 2214896 2216747 ECH
Bva11g01031 11 11916025 11921128 Bva05g00449 05 2214896 2216747 ECH
Bva05g00449 05 2214896 2216747 Bva05g00449 05 2214896 2216747 ECH